Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,241,758 – 4,241,850 |
Length | 92 |
Max. P | 0.887558 |
Location | 4,241,758 – 4,241,850 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 86.02 |
Mean single sequence MFE | -22.80 |
Consensus MFE | -17.09 |
Energy contribution | -17.87 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.04 |
Mean z-score | -2.68 |
Structure conservation index | 0.75 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.887558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4241758 92 - 20766785 UUACAACAUAGUGCUGUGUCUAACUGACACUGCUAAUCGAGUUAGAAAACAAAUGCUUGUGCUUUUAGUGUUCUAGCACUAAAC-AACUUCGU ........((((((.(((((.....))))).)).......(((((((.(((((.((....)).))).)).)))))))))))...-........ ( -22.60) >DroSec_CAF1 3313 91 - 1 UUACAAGAAAAUGCUGUGUCUAACUGACACGGCU--UCAAGAUAGAAUAGAAAUGCUUGUGCUUUUAGUGUUCCAGCACAAAAAAAAAAUCGU .((((((.....((((((((.....))))))))(--((......)))........)))))).((((.((((....)))).))))......... ( -22.00) >DroSim_CAF1 4803 93 - 1 UUACAAGAAAAUCCUGUGUCUAACUGACACUGCUCAUCAGGAUAGAAUAGAAAUGCUUGUGCUUUUAGUGCUCCAGCACUAAAAAAAAUUCGU .((((((...((((((((((.....)))))........)))))....((....)))))))).(((((((((....)))))))))......... ( -23.80) >consensus UUACAAGAAAAUGCUGUGUCUAACUGACACUGCU_AUCAAGAUAGAAUAGAAAUGCUUGUGCUUUUAGUGUUCCAGCACUAAAAAAAAUUCGU .((((((.....((.(((((.....))))).))...((......)).........))))))..((((((((....)))))))).......... (-17.09 = -17.87 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:48 2006