Locus 1033

Sequence ID 2R_DroMel_CAF1
Location 4,241,516 – 4,241,634
Length 118
Max. P 0.559410
window1834

overview

Window 4

Location 4,241,516 – 4,241,634
Length 118
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 72.03
Mean single sequence MFE -32.22
Consensus MFE -18.62
Energy contribution -18.77
Covariance contribution 0.15
Combinations/Pair 1.40
Mean z-score -1.32
Structure conservation index 0.58
SVM decision value 0.05
SVM RNA-class probability 0.559410
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4241516 118 + 20766785
GUUUUCGGUUCGAGGG--AUACGGUUUAGUAGUAGAAGAGUUCCGGAAAGUUCGUCUCGUAGAUGGGCUUCUCAUUGCUGGCUUGCAACUGACUGGACUUGGUGUCGCUUUGCGUGAUCU
......((((((((((--(((((((((((((((...........(..(((((((((.....)))))))))..)..(((......)))))).))))))))..))))).)))))...)))). ( -34.20)
>DroVir_CAF1 5609 105 + 1
---------------AAUAUAUGUUUUAGUAGUAGAACAGCUCUGGGAAUUUCGUCUCGUAGACGGGUUUCUCAUUGUUGGUCUGCAGUGGGGCUGUCUUAUUGUCGCUCAGCGUAAUCU
---------------....((((((...((((((..(((((((((((((.((((((.....)))))).)))))(((((......)))))))))))))..))))).)....)))))).... ( -33.40)
>DroYak_CAF1 3027 110 + 1
--------UUCGAGGA--AUACGUUUUAAUAGUAAAAGAGUUCCGGGAAGUUCGUCUCGUAGAUGGGCUUCUCAUUGCUAGCUUGCAACUGACUGGACUUAGUGUCGCUCUGCGUGAUCU
--------...(((..--((((.(((((....)))))((((.((((((((((((((.....))))))))))(((((((......)))).))))))))))).))))..))).......... ( -31.80)
>DroMoj_CAF1 2785 113 + 1
UUUUA-------UAUAAUUUUCGUUUUAGUAGUAGAAGAGCUCUGGGAAUUUCGUCUCAUAGACGGGCUUCUCAUUGGUUGUCUGCAUUUGAGCUGUUUUGCUAUCGCUUUGCGUUAUCU
.....-------.........(((....(((((((((.(((((((((((.((((((.....)))))).))))))...((.....))....))))).)))))))))......)))...... ( -31.50)
>DroAna_CAF1 3055 116 + 1
G--UCCGGUUUACAUA--AUACCAUUUAGUAAUAAAAGAGUUCGGGGAAGUUCGUCUCAUAGAUGGGCUUCUCAUUGCUCGCCUGCAGUUGAGCCGCCUUAUUGUCGCUCUGCGUGAUCU
(--((((((((((.((--(......))))))).....((((...((((((((((((.....))))))))))))...))))))).(((...((((.((......)).)))))))).))).. ( -34.80)
>DroPer_CAF1 7275 112 + 1
GUUCAC------AGUA--AUACAGAUUAGUAAUAGAAUAAUUCUGGAAAGUUUGUCUCGUAGAUGGGCUUCUCGUUGCUGCCCUGCAGCUGGGCCACCUUGCUGUCGCUUUGCGUUAUCU
....((------((((--(........(((((((((.....)))(..(((((..((.....))..)))))..)))))))((((.......))))....)))))))(((...)))...... ( -27.60)
>consensus
G__U________AGUA__AUACGUUUUAGUAGUAGAAGAGUUCUGGGAAGUUCGUCUCGUAGAUGGGCUUCUCAUUGCUGGCCUGCAGCUGAGCCGACUUACUGUCGCUCUGCGUGAUCU
..........................((((((.......((((.((((((((((((.....))))))))))))(((((......))))).))))....)))))).(((...)))...... (-18.62 = -18.77 +   0.15)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:47 2006