Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,241,154 – 4,241,247 |
Length | 93 |
Max. P | 0.765769 |
Location | 4,241,154 – 4,241,247 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 73.17 |
Mean single sequence MFE | -35.92 |
Consensus MFE | -14.48 |
Energy contribution | -15.52 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.42 |
Mean z-score | -2.02 |
Structure conservation index | 0.40 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.765769 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4241154 93 + 20766785 ACGGGUUGCGUCCAUUGCAAUCGUUGUUUUGCU--UUAGCAUCGAAUGUCCACUGAUUG-ACGUCGCCUUGGCGGCACUGUUGCAAUGGGC--CGACC ...(((((.((((((((((((((.((((.....--..)))).)))..(((........)-))(((((....)))))....)))))))))))--))))) ( -38.00) >DroSec_CAF1 2701 93 + 1 ACGGGUUACGUCCAUUGCAAUCGUCGUUGUGCU--UUAGCACCGCAUGUCCACUGAUUG-ACGUCGCCUUGGCGGCACGGUUGCAAUGGGC--CGACC ...((((..(((((((((((((((.((.((((.--...)))).))..(((........)-))(((((....))))))))))))))))))))--.)))) ( -43.90) >DroSim_CAF1 4195 93 + 1 ACGGGUUGCGUCCAUUGCAAUCGUCGUUGUGCU--UUAGCACCGCAUGUCCACUGAUUG-ACGUCGCCUUGGCGGCACGGUUGCAAUGGGC--CGAUC ...(((((.(((((((((((((((.((.((((.--...)))).))..(((........)-))(((((....))))))))))))))))))))--))))) ( -45.20) >DroEre_CAF1 2708 93 + 1 ACGGAUUGCGUCCAUUGCCAUCGUCCCUGUGCU--UUAGCACCGAGUAUCCACUGAUAG-AGCUUGCCUUGGAGGCGUGGCAGUGAGGUGC--CGACC .(((...((.((.(((((((.((((((.((((.--...))))(((((.((........)-))))))....)).))))))))))))).)).)--))... ( -33.50) >DroYak_CAF1 2676 93 + 1 ACGGAUUGCGUCCAUUGCCAUCGUCCUUAUGCU--UUAGCAUCGAAUAUGCGCUGAUAG-ACGUUGCCUUGGCGGCUUGGCAGCGAGGUUG--UGACC ...(((.(((.....))).)))((((....(((--((.((((.....))))((((...(-(.(((((....)))))))..))))))))).)--.))). ( -25.80) >DroAna_CAF1 2691 93 + 1 AAGGGUUACGCCCGCCGCCUUUAUAAACAUGCUCCCCAGCACGGAACG---ACUGGUUCCGAGUCGCAUUGCAG--AUGGCUGCACAGGGCUUCGAUC ..(((.....)))(((((...........((((....))))((((((.---....))))))....))..(((((--....)))))...)))....... ( -29.10) >consensus ACGGGUUGCGUCCAUUGCAAUCGUCGUUGUGCU__UUAGCACCGAAUGUCCACUGAUUG_ACGUCGCCUUGGCGGCACGGCUGCAAUGGGC__CGACC ..((.....((((.((((..((((....(((((....)))))....................(((((....)))))))))..)))).)))).....)) (-14.48 = -15.52 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:46 2006