Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,348,563 – 1,348,843 |
Length | 280 |
Max. P | 0.933784 |
Location | 1,348,563 – 1,348,683 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.00 |
Mean single sequence MFE | -37.98 |
Consensus MFE | -28.18 |
Energy contribution | -29.30 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.14 |
Mean z-score | -1.80 |
Structure conservation index | 0.74 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704340 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1348563 120 + 20766785 CGAGUAGUAGUGUGUGCACUCGUUCGCCCGCACGAGUUUUCUUUGCGCUGCUCCUUUGAUAAAUGCGCAUAAUUUCAGUAGGUUUUCCUGGAGUAGUGAGGAAAACUUGUCCGUGUGCGC (((((.(((.....))))))))..((((((.(((((((((((...(((((((((.((((...............)))).(((....)))))))))))).))))))))))).)).).))). ( -41.96) >DroSec_CAF1 66867 110 + 1 CGAGUGGUAGUGUGUGCGCUCGUUCGC----------UUUCUUUGCGCUGCUCCUUUGAUAAAUGCGCAUAAUUUCAGUAGGUUUUCCUGGAGUAGCGAGGAAAACUUGUCCGUGUGCGC .(((..((((((((.(((......)))----------......))))))))..)))........(((((((.......(((((((((((.(.....).)))))))))))....))))))) ( -35.90) >DroSim_CAF1 45002 110 + 1 CGAGCAGUAGUGUGUGCGCUCGUUCGC----------UUUCUUUGCGCUGCUCCUUUGAUAAAUGCGCAUAAUUUCAGUAGGUUUUCCUGGAGUAGCGAGGAAAACUUGUCCGUGUGCGC .(((((((((((....)))).....((----------.......)))))))))...........(((((((.......(((((((((((.(.....).)))))))))))....))))))) ( -37.90) >DroEre_CAF1 47441 115 + 1 -----AGUAGUGUGUGCGCUCGCUCGCCCGCACGAGUUUUCUUUGCGCUGCUCCUUUGAUAAAUGCGCAUAAUUUCAGUAGGUUUUCCUGGAGUAGCGAAGGAAACUUCUCCUUGUGUGC -----......(((.((....)).))).((((((((..........((((((((.((((...............)))).(((....)))))))))))((((....))))..)))))))). ( -38.16) >DroYak_CAF1 34974 113 + 1 -----AGUAGUGUGCGCGCUCGUUCGCCCGCAUGAGUUUUCUUUGCGCUGCUCCUUUGAUAAAUGCGCAUAAUUUCAGUAGGUUUUCCUGGAGUAGCGAAGAAAACUUCUUCUUG--UGC -----......(((((.((......)).)))))(((((((((...(((((((((.((((...............)))).(((....)))))))))))).))))))))).......--... ( -35.96) >consensus CGAG_AGUAGUGUGUGCGCUCGUUCGCCCGCA_GAGUUUUCUUUGCGCUGCUCCUUUGAUAAAUGCGCAUAAUUUCAGUAGGUUUUCCUGGAGUAGCGAGGAAAACUUGUCCGUGUGCGC ......(.((((....)))))((.(((......(((((((((...(((((((((.((((...............)))).(((....)))))))))))).)))))))))......))).)) (-28.18 = -29.30 + 1.12)
Location | 1,348,643 – 1,348,763 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.06 |
Mean single sequence MFE | -31.03 |
Consensus MFE | -22.86 |
Energy contribution | -23.22 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.05 |
Mean z-score | -2.32 |
Structure conservation index | 0.74 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.887180 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1348643 120 - 20766785 UUUAACGCUGCGCUGCGAACAAUAAAGCGCAGCAGCGAGACUAUUGCACACAGCAACAUUCACACACUCGCACUCCAAAGGCGCACACGGACAAGUUUUCCUCACUACUCCAGGAAAACC ......((((((((...........)))))))).(((((....((((.....))))..........)))))..(((............)))...((((((((.........)))))))). ( -31.64) >DroSec_CAF1 66937 120 - 1 UUUAACGCUGCGCUGCGAACAAUAAAGCGCAGCAACGAGACUAUUGCACACAGCAGCACUCACACACUCGCACUCCAGCGGCGCACACGGACAAGUUUUCCUCGCUACUCCAGGAAAACC .....((((((((((((..........))))))...(((....((((.....))))..)))................))))))...........((((((((.(.....).)))))))). ( -33.40) >DroSim_CAF1 45072 120 - 1 UUUAACGCUGCGCUGCGAACAAUAAAGCGCAGCAGCGAGACUAUUGCACACAGCAGCACUCACACACUCGCACUCCAGCGGCGCACACGGACAAGUUUUCCUCGCUACUCCAGGAAAACC .....((((((((((((..........)))))).(((((.....(((.....)))(......)...)))))......))))))...........((((((((.(.....).)))))))). ( -37.30) >DroEre_CAF1 47516 117 - 1 UUUAACGCUGCGCUGCGAACAAUAAAGCGCAGCAGCGCGACUAUUGCACACAGAAGCACUUACACACUCACACACUC---GCACACAAGGAGAAGUUUCCUUCGCUACUCCAGGAAAACC ......((((((((...........)))))))).(.((((....(((........))).................))---)).)....((((.(((.......))).))))......... ( -27.30) >DroYak_CAF1 35049 115 - 1 UUUAACGCUGCGCUGUGAACAAUAAAGCGCAGCAGCGAGACUAUUGCACACAGAAACCCUCACACAUUCACACACUU---GCA--CAAGAAGAAGUUUUCUUCGCUACUCCAGGAAAACC ......((((((((...........)))))))).((((.....))))...........................(((---(..--...(((((.....))))).......))))...... ( -25.50) >consensus UUUAACGCUGCGCUGCGAACAAUAAAGCGCAGCAGCGAGACUAUUGCACACAGCAGCACUCACACACUCGCACUCCA__GGCGCACACGGACAAGUUUUCCUCGCUACUCCAGGAAAACC ......((((((((...........)))))))).((((.....))))...............................................((((((((.........)))))))). (-22.86 = -23.22 + 0.36)
Location | 1,348,683 – 1,348,803 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.82 |
Mean single sequence MFE | -28.53 |
Consensus MFE | -22.54 |
Energy contribution | -23.10 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -2.14 |
Structure conservation index | 0.79 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1348683 120 - 20766785 AAGCUAUCCAAGACAUCCAAGCCAGCCAGCCGGCAUAAUGUUUAACGCUGCGCUGCGAACAAUAAAGCGCAGCAGCGAGACUAUUGCACACAGCAACAUUCACACACUCGCACUCCAAAG ..........((((((....(((.(....).)))...))))))...((((((((...........)))))))).(((((....((((.....))))..........)))))......... ( -31.14) >DroSec_CAF1 66977 107 - 1 -------------CAUCCAAGUCAGCCAGCCGGCAUAAUGUUUAACGCUGCGCUGCGAACAAUAAAGCGCAGCAACGAGACUAUUGCACACAGCAGCACUCACACACUCGCACUCCAGCG -------------......((((.(((....)))............((((((((...........)))))))).....)))).((((.....))))............(((......))) ( -29.00) >DroSim_CAF1 45112 107 - 1 -------------CAUCCAAGUCAGCCAGCCGGCAUAAUGUUUAACGCUGCGCUGCGAACAAUAAAGCGCAGCAGCGAGACUAUUGCACACAGCAGCACUCACACACUCGCACUCCAGCG -------------...........(((....)))............(((((((((((..........)))))).((((.....)))).....)))))...........(((......))) ( -30.50) >DroEre_CAF1 47556 107 - 1 ----------AGCCAUCCAAGUCAGCCAGCCGGCAUAAUGUUUAACGCUGCGCUGCGAACAAUAAAGCGCAGCAGCGCGACUAUUGCACACAGAAGCACUUACACACUCACACACUC--- ----------.........((((.(((....)))............((((((((...........)))))))).....))))..(((........)))...................--- ( -26.40) >DroYak_CAF1 35087 102 - 1 ---------------UCCAAGCCAGCCAGCCGGCAUAAUGUUUAACGCUGCGCUGUGAACAAUAAAGCGCAGCAGCGAGACUAUUGCACACAGAAACCCUCACACAUUCACACACUU--- ---------------.....(((.(....).)))..(((((.....((((((((...........)))))))).((((.....))))................))))).........--- ( -25.60) >consensus _____________CAUCCAAGUCAGCCAGCCGGCAUAAUGUUUAACGCUGCGCUGCGAACAAUAAAGCGCAGCAGCGAGACUAUUGCACACAGCAGCACUCACACACUCGCACUCCA__G ...................((((.(((....)))............((((((((...........)))))))).....)))).((((.....))))........................ (-22.54 = -23.10 + 0.56)
Location | 1,348,723 – 1,348,843 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.98 |
Mean single sequence MFE | -27.32 |
Consensus MFE | -23.42 |
Energy contribution | -23.67 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 0.86 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663790 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1348723 120 - 20766785 ACUCAGCCGUUCUAAGCCACCCAAGCCAUCCAAGCUAUCCAAGCUAUCCAAGACAUCCAAGCCAGCCAGCCGGCAUAAUGUUUAACGCUGCGCUGCGAACAAUAAAGCGCAGCAGCGAGA .(((.((.(((...(((......(((.......)))......))).....((((((....(((.(....).)))...)))))))))((((((((...........)))))))).))))). ( -31.20) >DroSec_CAF1 67017 102 - 1 ACUCAGCCCUUCUAAGCCACCCAAGCCAGCCAAGC------------------CAUCCAAGUCAGCCAGCCGGCAUAAUGUUUAACGCUGCGCUGCGAACAAUAAAGCGCAGCAACGAGA .(((........(((((.......(((.((...((------------------...........))..)).))).....)))))..((((((((...........))))))))...))). ( -26.40) >DroSim_CAF1 45152 102 - 1 ACUCAGCCCUUCUAAGCCACCCAAGCCAGCCAAGC------------------CAUCCAAGUCAGCCAGCCGGCAUAAUGUUUAACGCUGCGCUGCGAACAAUAAAGCGCAGCAGCGAGA .(((.((.....(((((.......(((.((...((------------------...........))..)).))).....)))))..((((((((...........)))))))).))))). ( -27.40) >DroEre_CAF1 47593 110 - 1 ACUCAGCCCUUCUAAGCCACCCAAGCCACCCAAGCCACCC----------AGCCAUCCAAGUCAGCCAGCCGGCAUAAUGUUUAACGCUGCGCUGCGAACAAUAAAGCGCAGCAGCGCGA .....((.((..(((((................((.....----------.))...........(((....))).....)))))..((((((((...........)))))))))).)).. ( -24.30) >consensus ACUCAGCCCUUCUAAGCCACCCAAGCCAGCCAAGC__________________CAUCCAAGUCAGCCAGCCGGCAUAAUGUUUAACGCUGCGCUGCGAACAAUAAAGCGCAGCAGCGAGA .(((........(((((.......((.......)).............................(((....))).....)))))..((((((((...........))))))))...))). (-23.42 = -23.67 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:15 2006