Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,236,590 – 4,236,704 |
Length | 114 |
Max. P | 0.712365 |
Location | 4,236,590 – 4,236,704 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 87.02 |
Mean single sequence MFE | -25.08 |
Consensus MFE | -20.04 |
Energy contribution | -18.68 |
Covariance contribution | -1.36 |
Combinations/Pair | 1.29 |
Mean z-score | -1.64 |
Structure conservation index | 0.80 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4236590 114 + 20766785 UUAAGCUGUCAAUCAGCUGAUUUUGCAUCCAUAAAUAAAAGAGUGCUGCUUGUAGCCUUAUCUGUAGGUUAACCACAUAUAUUAACCUGCUUCAAACACCUUUCUCCGAUUUCG ...(((((.....)))))((..(((...............(((.((((....)))))))....(((((((((.........)))))))))................)))..)). ( -23.30) >DroSec_CAF1 6018 114 + 1 UUGCGUUGUCAAUCAGCUGAUUUUGCAUCCAUAAAUAAAGGAGCGCUGCUUGUGGCCCUAUCUGUAGGUUAAACACACUUAUUAACCUGCUACAAACACCUAUCUCCGAUUUCG .((((..((((......))))..))))............((((.(.((.(((((((.........(((((((.........)))))))))))))).)).)...))))....... ( -25.30) >DroSim_CAF1 6884 114 + 1 UUGCGUUGUCAAUCAGCUGAUUUUGCAUCCAUAAAUAAAGGAGCGCUGCUUGUGGCCCUAUCUGCAGGUUAAACACACAUAUUAACCUGCUACAAACACCUAUCUCCGAUUUCG .((((..((((......))))..))))............((((.((((....)))).......(((((((((.........))))))))).............))))....... ( -26.50) >DroEre_CAF1 5897 113 + 1 UUGCGCUGUAAAUCAGCUGAUUUCGCAUCCAUAAAUAAAAGAGCGCGGUGCGUGGCCUUAUCUGCAGGUUAACCACACUA-UUAACCUGUUUCAAACACCUAUCUACGAUUUCA ....((((.....)))).((..((((.((...........))..))((((..(((........(((((((((........-))))))))).)))..)))).......))..)). ( -24.90) >DroYak_CAF1 5849 112 + 1 UUGCGCUAUCAAUCAGCUGAUUUCGCAUCCAUAAAUAAAAAAGUGCGGUUCGUGGCCUUAUAUGCAGGUUAACCACACUAAUUAACCUGCUUUAAACACCUAUC--CGAUUUCC .((((..((((......))))..)))).............((((.(((...(((...(((...(((((((((.........)))))))))..))).)))....)--)))))).. ( -25.40) >consensus UUGCGCUGUCAAUCAGCUGAUUUUGCAUCCAUAAAUAAAAGAGCGCUGCUUGUGGCCUUAUCUGCAGGUUAACCACACUUAUUAACCUGCUUCAAACACCUAUCUCCGAUUUCG ....((((.....)))).((..(((.............(((..(((.....)))..)))....(((((((((.........)))))))))................)))..)). (-20.04 = -18.68 + -1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:42 2006