Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,233,814 – 4,233,951 |
Length | 137 |
Max. P | 0.940183 |
Location | 4,233,814 – 4,233,919 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 84.60 |
Mean single sequence MFE | -37.52 |
Consensus MFE | -28.75 |
Energy contribution | -29.00 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.23 |
Mean z-score | -3.73 |
Structure conservation index | 0.77 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.940183 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4233814 105 + 20766785 UUUGCUCAGAUGGCUGCCGUUGGAUAUCCGAUUCAGUAUCUAAGUAUCUCAGGUUGAAGGCCUUG-----------CAACGACCCGAGAUGCGGCAACUUGCCAUCUUUAGUUAAA ...(((.(((((((((((.((((((((........))))))))(((((((.(((((...((...)-----------)..))))).)))))))))))....)))))))..))).... ( -40.20) >DroSec_CAF1 3294 105 + 1 UUUGCUCAGAUGGCUGCCGUUGGAUAUCCGAUUCGGUAUCUAAGUAUCUCAGGUUGAAGGCCUUG-----------CAACGACCCUAGAUGCGGCAACUUGCCAUCUUUAGUUUAA ...(((.(((((((((((.(((((((((......)))))))))((((((..(((((...((...)-----------)..)))))..))))))))))....)))))))..))).... ( -39.00) >DroSim_CAF1 3301 105 + 1 UUUGCUCAGAUGGCUGCCGUUGAAUACCCGAUUCGGUAUCUAAGUAUCUCAGGUUGAAGGCCUUG-----------CAACGACCCUAGAUGCGGCAACUUGCCAUCUUUAGUUUAA ...(((.(((((((((((.(((.(((((......))))).)))((((((..(((((...((...)-----------)..)))))..))))))))))....)))))))..))).... ( -35.40) >DroEre_CAF1 3283 105 + 1 UUUGCUCAGAUGGCUGCCGUUGGAUAUCCGAUUCGGUAUCUAAGUAUCUCAGGUUGAAGGCCUUG-----------CAACGACCUUAGAUGCGGCAGCUUGCCAUCUUUAGUUUAA ...(((.(((((((((((.(((((((((......)))))))))((((((.((((((...((...)-----------)..)))))).))))))))))....)))))))..))).... ( -41.00) >DroYak_CAF1 3324 105 + 1 UUUGCUCAGAUGGCUGCCAUUGGAUAUCCCAUUCGGUAUCUAAGUAUCUCAGGUUGAAGGCCUUG-----------CAACGAUCUUAGAUGCGACAACUUGCCAUCAUUAGUUUAA ........((((((.....(((((((((......)))))))))((((((.((((((...((...)-----------)..)))))).))))))........)))))).......... ( -32.10) >DroAna_CAF1 19880 111 + 1 UUUGCACAAAUGGCCGUGCUUGGAUAUCCGAUUUUGUGUCCAAGUAUCUCAGGUUGAUGGCUUUGUUUUCAACACGCCUCGACCUUUGAUGCGGCAU----UCAUUUCUCAUAUA- ............(((((((((((((((........))))))))))(((..(((((((.(((..(((.....))).))))))))))..))))))))..----..............- ( -37.40) >consensus UUUGCUCAGAUGGCUGCCGUUGGAUAUCCGAUUCGGUAUCUAAGUAUCUCAGGUUGAAGGCCUUG___________CAACGACCCUAGAUGCGGCAACUUGCCAUCUUUAGUUUAA ........((((((((((.(((((((((......)))))))))((((((..(((((.......................)))))..))))))))))....)))))).......... (-28.75 = -29.00 + 0.25)
Location | 4,233,853 – 4,233,951 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 77.26 |
Mean single sequence MFE | -22.34 |
Consensus MFE | -12.55 |
Energy contribution | -12.80 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.14 |
Mean z-score | -1.98 |
Structure conservation index | 0.56 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864578 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4233853 98 + 20766785 CUAAGUAUCUCAGGUUGAAGGCCUUG-----------CAACGACCCGAGAUGCGGCAACUUGCCAUCUUUAGUUAAAUUAUUCA--UCAGAAAUUCAU-CAUGAAAUUUAA-----U ....(((((((.(((((...((...)-----------)..))))).)))))))(((.....))).......((((((((..(((--(..((......)-))))))))))))-----) ( -25.60) >DroSec_CAF1 3333 98 + 1 CUAAGUAUCUCAGGUUGAAGGCCUUG-----------CAACGACCCUAGAUGCGGCAACUUGCCAUCUUUAGUUUAAUUAUUCA--UCAGAAAUCCAU-CAUGAAAUUUAA-----U ((((((((((..(((((...((...)-----------)..)))))..))))))(((.....)))....))))........((((--(..((......)-))))))......-----. ( -20.90) >DroSim_CAF1 3340 98 + 1 CUAAGUAUCUCAGGUUGAAGGCCUUG-----------CAACGACCCUAGAUGCGGCAACUUGCCAUCUUUAGUUUAAUUAUUCA--UCAGAAAUCCAU-CAUGAAAUUUAA-----U ((((((((((..(((((...((...)-----------)..)))))..))))))(((.....)))....))))........((((--(..((......)-))))))......-----. ( -20.90) >DroEre_CAF1 3322 90 + 1 CUAAGUAUCUCAGGUUGAAGGCCUUG-----------CAACGACCUUAGAUGCGGCAGCUUGCCAUCUUUAGUUUAAUUAUUCA--CCAG---------UGUGAAAUUUAA-----U ((((((((((.((((((...((...)-----------)..)))))).))))))(((.....)))....))))........((((--(...---------.)))))......-----. ( -25.20) >DroYak_CAF1 3363 90 + 1 CUAAGUAUCUCAGGUUGAAGGCCUUG-----------CAACGAUCUUAGAUGCGACAACUUGCCAUCAUUAGUUUAAUUAUUCA--UCAG---------UGUGAAAUUUAA-----U ....((((((.((((((...((...)-----------)..)))))).))))))...........................((((--(...---------.)))))......-----. ( -15.30) >DroAna_CAF1 19919 112 + 1 CCAAGUAUCUCAGGUUGAUGGCUUUGUUUUCAACACGCCUCGACCUUUGAUGCGGCAU----UCAUUUCUCAUAUA-UUCUUCUCCCCAUUACCCCCUGAAGGAAAUUGAAUCUUAU ....(((((..(((((((.(((..(((.....))).))))))))))..))))).....----.......(((....-((((((...............))))))...)))....... ( -26.16) >consensus CUAAGUAUCUCAGGUUGAAGGCCUUG___________CAACGACCCUAGAUGCGGCAACUUGCCAUCUUUAGUUUAAUUAUUCA__UCAGAAAUCCAU_CAUGAAAUUUAA_____U ....((((((..(((((.......................)))))..))))))(((.....)))..................................................... (-12.55 = -12.80 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:41 2006