Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,231,338 – 4,231,450 |
Length | 112 |
Max. P | 0.999317 |
Location | 4,231,338 – 4,231,450 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 78.61 |
Mean single sequence MFE | -33.98 |
Consensus MFE | -24.31 |
Energy contribution | -25.27 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.20 |
Mean z-score | -3.24 |
Structure conservation index | 0.72 |
SVM decision value | 3.38 |
SVM RNA-class probability | 0.999118 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4231338 112 + 20766785 -----CCUAUUAAAAGAGUCCUAGAAACCUCGAAGGAUUUAAGAAGGCUAUUUAAGCUUUACUAAAGUAAAGUGGCGAUUUAAAUCUUUUGAGGUCUCUGUAACUCCACCGAUUAUA -----..........((((..((((.(((((((((((((((((...(((......(((((((....))))))))))..))))))))))))))))).))))..))))........... ( -37.00) >DroSec_CAF1 833 99 + 1 -----CCUUCUAAGGGAGUCCCAGAAACCUCUAGUGAUUUCAGAAGGCUAUUUUCGC-------------GGUAGCGGUUUAAAUCUGUUGAGGUCUCUGUAACUCCACCGAUUGUA -----.........(((((..((((.(((((....(((((.(((..((((((.....-------------))))))..))))))))....))))).))))..))))).......... ( -32.70) >DroSim_CAF1 832 107 + 1 -----CCUUCUAAGGGAGUCCCAGAAACCUCUAGGGAUUUAAGAAGGCUAUUUUCGCUUUACAGA-----AGUAGCGGUUUAAAUCUGUUGAGGUCUCUGUAACUCCGCCGAUUGUA -----.........(((((..((((.(((((.(.(((((((((...(((((((..(.....)..)-----))))))..))))))))).).))))).))))..))))).......... ( -39.40) >DroEre_CAF1 840 111 + 1 AAGAACCUUAUAAGGAAGUCCAAGAAACCGCUAGGGAUUUAAGAAAGCUACUUUCGUUU-GCCGA-----AGUAGCGGUUUAAAUCUGUUGCGGUCUUUGUAACUCCCCCGAUUGUA .............((.(((...(((.(((((.(.(((((((((...((((((((.(...-.).))-----))))))..))))))))).).))))).)))...))).))......... ( -34.20) >DroYak_CAF1 840 111 + 1 AUGAACCUUUUAAGGAAUUCCCAGAAACCUCUACGGAUUUAAGAAGGCUAAUUUGGCUG-AAUGA-----AGUAGCGGUUUAAAUCUGUUGAGCUCUCUGAAUUUCCCCCGAUUGUA .............((((....((((...(((.(((((((((((...((((.((((....-..)))-----).))))..))))))))))).)))...))))...)))).......... ( -26.60) >consensus _____CCUUCUAAGGGAGUCCCAGAAACCUCUAGGGAUUUAAGAAGGCUAUUUUCGCUU_ACUGA_____AGUAGCGGUUUAAAUCUGUUGAGGUCUCUGUAACUCCACCGAUUGUA ..............(((((..((((.(((((.(.(((((((((...((((((..................))))))..))))))))).).))))).))))..))))).......... (-24.31 = -25.27 + 0.96)
Location | 4,231,338 – 4,231,450 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 78.61 |
Mean single sequence MFE | -32.56 |
Consensus MFE | -23.79 |
Energy contribution | -24.51 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.14 |
Mean z-score | -3.37 |
Structure conservation index | 0.73 |
SVM decision value | 3.51 |
SVM RNA-class probability | 0.999317 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4231338 112 - 20766785 UAUAAUCGGUGGAGUUACAGAGACCUCAAAAGAUUUAAAUCGCCACUUUACUUUAGUAAAGCUUAAAUAGCCUUCUUAAAUCCUUCGAGGUUUCUAGGACUCUUUUAAUAGG----- ....((..(.((((((..(((((((((.((.(((((((........(((((....)))))(((.....)))....))))))).)).)))))))))..)))))).)..))...----- ( -30.70) >DroSec_CAF1 833 99 - 1 UACAAUCGGUGGAGUUACAGAGACCUCAACAGAUUUAAACCGCUACC-------------GCGAAAAUAGCCUUCUGAAAUCACUAGAGGUUUCUGGGACUCCCUUAGAAGG----- .......((.(((((..((((((((((....(((((.....((((..-------------.......))))......)))))....))))))))))..))))))).......----- ( -31.70) >DroSim_CAF1 832 107 - 1 UACAAUCGGCGGAGUUACAGAGACCUCAACAGAUUUAAACCGCUACU-----UCUGUAAAGCGAAAAUAGCCUUCUUAAAUCCCUAGAGGUUUCUGGGACUCCCUUAGAAGG----- .......((.(((((..((((((((((....(((((((...((((.(-----(.((.....)).)).))))....)))))))....))))))))))..))))))).......----- ( -35.00) >DroEre_CAF1 840 111 - 1 UACAAUCGGGGGAGUUACAAAGACCGCAACAGAUUUAAACCGCUACU-----UCGGC-AAACGAAAGUAGCUUUCUUAAAUCCCUAGCGGUUUCUUGGACUUCCUUAUAAGGUUCUU .......(((((((((.((((((((((....(((((((...((((((-----(((..-...)).)))))))....)))))))....))))))).))))))))))))........... ( -37.40) >DroYak_CAF1 840 111 - 1 UACAAUCGGGGGAAAUUCAGAGAGCUCAACAGAUUUAAACCGCUACU-----UCAUU-CAGCCAAAUUAGCCUUCUUAAAUCCGUAGAGGUUUCUGGGAAUUCCUUAAAAGGUUCAU ...((((.((((((.((((((((.(((.((.(((((((...((((..-----.....-.........))))....))))))).)).))).))))))))..))))))....))))... ( -27.99) >consensus UACAAUCGGGGGAGUUACAGAGACCUCAACAGAUUUAAACCGCUACU_____UCAGU_AAGCGAAAAUAGCCUUCUUAAAUCCCUAGAGGUUUCUGGGACUCCCUUAAAAGG_____ .......((.((((((.((((((((((....(((((((...((((......................))))....)))))))....)))))))))).))))))))............ (-23.79 = -24.51 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:39 2006