Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,229,889 – 4,230,009 |
Length | 120 |
Max. P | 0.564070 |
Location | 4,229,889 – 4,230,009 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.83 |
Mean single sequence MFE | -24.80 |
Consensus MFE | -21.22 |
Energy contribution | -21.14 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.10 |
Mean z-score | -1.32 |
Structure conservation index | 0.86 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564070 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4229889 120 - 20766785 GUUAUCUCGUAAGACUAUGCAUAUUGAAUACCGUGUACUGAAUUCAGAGCACAGGCAGUCAUAAUCCAUUAAUUAUGAUGAUAUUACCAGCAACAGUAAAGUUUUAUGUGUGUACAAUAU ((...(.(((((((((.(((..........((((((.(((....))).)))).))..((((((((......))))))))................))).))))))))).)...))..... ( -28.00) >DroSec_CAF1 41802 120 - 1 GCUAUCUCGUAAGACUAUACAUAUUGAAUACCGUGUACUGAAUUCAGAGCACAGGCAGACAUAAUCCAUUAAUUAUGAUGAUAUUAACAGCAACAGUAAAGUUUUAUGUGUGUACAACAU ((...(.(((((((((.(((..........((((((.(((....))).)))).))....((((((......))))))..................))).))))))))).).))....... ( -24.10) >DroSim_CAF1 72992 120 - 1 GCUAUCUCGUAAGACUAUGCAUAUUGAAUACCGUGUACUGAAUUCAGAGCACAGGCAGACAUAAUCCAUUAAUUAUGAUGAUAUUAACAGCAACAGUAAAGUUUUAUGUGUGUACAAUAU ((....((....))....))((((((......((((.(((....))).))))..(((.((((((..(.(((....((.((.......)).))....))).)..)))))).))).)))))) ( -25.70) >DroEre_CAF1 43090 120 - 1 GUUAUCUCGUAAGACUAUGCAUAUUAAAUACCGUGUACUGAAUUUGCAGCACAGGCAGACAUAAUCGAUUAAUUAUGAUGAUAUUACCAGCAACAGUAAAGUUUUAUGUGUGUACAAUAU ((...(.(((((((((.(((..........((.(((.(((......))).)))))....((((((......))))))..................))).))))))))).)...))..... ( -21.90) >DroYak_CAF1 45179 120 - 1 GCUAUCUCGUAAGACUAUGCAUAUUGAAUAGCGUGUACUGAAUUCACAGCACAGGCAGACAUAAUCCAUUAAUUAUGAUGAUAUUACCAGCAACAGUAAAGUUUUAUGUGUGUACAAUAU ((...(.(((((((((.(((..........((.(((.(((......))).))).))...((((((......))))))..................))).))))))))).).))....... ( -24.30) >consensus GCUAUCUCGUAAGACUAUGCAUAUUGAAUACCGUGUACUGAAUUCAGAGCACAGGCAGACAUAAUCCAUUAAUUAUGAUGAUAUUACCAGCAACAGUAAAGUUUUAUGUGUGUACAAUAU .....(.(((((((((.(((............((((.(((....))).))))..((...((((((......)))))).((.......))))....))).))))))))).).......... (-21.22 = -21.14 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:35 2006