Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,224,080 – 4,224,200 |
Length | 120 |
Max. P | 0.519678 |
Location | 4,224,080 – 4,224,200 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.08 |
Mean single sequence MFE | -42.64 |
Consensus MFE | -38.62 |
Energy contribution | -38.86 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.06 |
Mean z-score | -1.12 |
Structure conservation index | 0.91 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519678 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4224080 120 - 20766785 UGGGCGUGGCCAACUCCACACCCGAUCUCCUGGUCAACCUGUCGCCAGUCAGGAUGGAGGGUCUCACCUUCAACAUAGCCAUGGCCAAUGCCCUAACGAUAAUUUGCUUGAGCGGAGGAG .(((.((((......)))).)))..(((((((((((.((((.(....).)))).((((((......)))))).........))))))..((.(...(((....)))...).))))))).. ( -42.10) >DroSec_CAF1 35932 120 - 1 UGGGCGUGGCCAACUCCACACCCGAUCUCCUGGUCAACCUUUCACCUGCCAGGCUGGAGGGUCUCACCUUCAACAUAGCCAUGGCCAAUGCCCUAACGAUAAUUUGCUUGAGCGGAGGAG .(((.((((......)))).)))...(((((((....))......(((((((((((((((......))))))..........(((....))).............))))).))))))))) ( -41.20) >DroSim_CAF1 63642 120 - 1 UGGGCGUGGCCAACUCCACACCCGAUCUCCUGGUCAACCUGUCGCCAGCCAGGCUGGAGGGUCUCACCUUCAACAUAGCCAUGGCCAAUGCCCUAACGAUAAUUUGCUUGAGCGGAGGAG .(((.((((......)))).)))((((....))))..(((.((((((((((((((((((((.....)))))....))))).)))).......(....)..........)).))))))).. ( -42.10) >DroEre_CAF1 37451 120 - 1 UGGGCGUGGCCAACUCCACACCCGAUCUCUUGGUCAACCUGUCGCCAGCCAGGCUGGAGGGUCUCACCUUCAACAUAGCCAUGGCCAACGCCCUGACGAUCAUUUGCUUGAGCGGCGGAG .(((.((((......)))).)))((((....))))...(((((((..((((((((((((((.....)))))....))))).))))(((.((..((.....))...))))).))))))).. ( -46.40) >DroYak_CAF1 38577 120 - 1 UGGGCGUGGCCAACUCCACACCCGAUCUCUUGGUAAACCUGUCGCCAGCCAGGCUGGAGGGUCUCACCUUUAACAUAGCCAUGGCCAACGCCCUGACGAUCAUUUGCUUGAGCGGGGGAG .(((.((((......)))).)))...(((.((((.........))))((((((((((((((.....)))))....))))).)))).....(((((....(((......))).)))))))) ( -41.40) >consensus UGGGCGUGGCCAACUCCACACCCGAUCUCCUGGUCAACCUGUCGCCAGCCAGGCUGGAGGGUCUCACCUUCAACAUAGCCAUGGCCAAUGCCCUAACGAUAAUUUGCUUGAGCGGAGGAG .(((((((((((.(((((.....((((....))))..((((.(....).)))).)))))((.....)).............))))).)))))).........(((((....))))).... (-38.62 = -38.86 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:27 2006