Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,347,875 – 1,347,995 |
Length | 120 |
Max. P | 0.826211 |
Location | 1,347,875 – 1,347,995 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.63 |
Mean single sequence MFE | -28.67 |
Consensus MFE | -22.11 |
Energy contribution | -22.12 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.10 |
Mean z-score | -2.33 |
Structure conservation index | 0.77 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826211 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1347875 120 + 20766785 CCUAAAUUUGCUCAUAAGUGUAAGGAUUUCUGCACCCAAUGGUGUAGAAUACAUUUAUUAAGUCGGUGCACUUAAAAAUGGUUUCCAUCCCCAUAUAUGUACCGAUAUUUGUUGUAUUGG ........(((..(((((((((.....(((((((((....))))))))))))))))))...(((((((((..((...((((...)))).....))..))))))))).......))).... ( -31.70) >DroSec_CAF1 66196 108 + 1 CCUAAAUUUGCUCAUAAGUGUGAGGAUUUCUGCACCAGUUGGUGUAGAAUAUAUUUAUUAGAUCGGUGUACUUCAAAAUGGUUUCCAU------------ACCGAUAUUUGUUGUAUUAU .((((.....(((((....)))))...(((((((((....)))))))))........))))(((((((((((.......)))....))------------)))))).............. ( -28.10) >DroSim_CAF1 44354 108 + 1 CCUAAAUUUGCUCAUAAGUGUGAGGAUUUCUGCACCCGUUGGUGUAGAAUAUAUUUCUUAGAUCAGUGUACUUCAAAAUGGUUUCCAU------------ACCGAUAUUUGUUGUAUUGG ......((((..(((..((.((((((.(((((((((....))))))))).....)))))).))..))).....))))((((...))))------------.(((((((.....))))))) ( -26.20) >consensus CCUAAAUUUGCUCAUAAGUGUGAGGAUUUCUGCACCCGUUGGUGUAGAAUAUAUUUAUUAGAUCGGUGUACUUCAAAAUGGUUUCCAU____________ACCGAUAUUUGUUGUAUUGG ........(((..(((((((((.....(((((((((....))))))))))))))))))...((((((..........((((...))))............)))))).......))).... (-22.11 = -22.12 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:11 2006