Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,220,586 – 4,220,706 |
Length | 120 |
Max. P | 0.784305 |
Location | 4,220,586 – 4,220,706 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.17 |
Mean single sequence MFE | -35.16 |
Consensus MFE | -30.58 |
Energy contribution | -29.82 |
Covariance contribution | -0.76 |
Combinations/Pair | 1.15 |
Mean z-score | -1.36 |
Structure conservation index | 0.87 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.762819 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4220586 120 + 20766785 GCAGAAUGAUGGCCAGAGUAUUACCCACAGUUAUGGUAAAGAUGGGUGCAUCGGCCCUCACGGGCAUCAGAUUAGCUAUUAUUUCUGGACUGCAGUUACCAAAAGCCAGAAAGGUAACUC ((((........((((((..(((((.........))))).(((((.((.(((.((((....))))....))))).)))))..)))))).))))(((((((............))))))). ( -34.30) >DroSec_CAF1 32126 120 + 1 GCAGAAUGAUGGCCAGAGUAUUACCCACAGUUAUGGUAAAGAUGGGUGCAUCGGCCCUCACGGGCAUCAGAUUAGCUAUUAUUUCUGGACUGCAGUUACCAAAAGCCAGAAAGGUAACUC ((((........((((((..(((((.........))))).(((((.((.(((.((((....))))....))))).)))))..)))))).))))(((((((............))))))). ( -34.30) >DroSim_CAF1 59438 120 + 1 GCAGAAUGAUGGCCAGAGUAUUACCCACAGUUAUGGUAAAGAUGGGUGCAUCGGCCCUCACGGGCAUCAGAUUAGCUAUUAUUUCUGGACUGCAGUUACCAAAUGCCAGAAAGGUAACUC ((((........((((((..(((((.........))))).(((((.((.(((.((((....))))....))))).)))))..)))))).))))(((((((............))))))). ( -34.30) >DroEre_CAF1 33637 120 + 1 GCAGAAUAAUGGCCAAAAUAUUACCGACAGCUAUGGUAAAGAUGGGUGCAUCGGCCCUCACGGGCAUCAGAUUGGCUAUUAUUUCUGGACUACAGUUGCCAAAUGCCAGAAAGGUAACGC .(((((((((((((((....((((((.......)))))).((((....)))).((((....))))......)))))))))).))))).......((((((............)))))).. ( -39.00) >DroYak_CAF1 34838 120 + 1 GAAGCAUUAUGGCCAGAGUAUUGCCCACAGCUAUGGUAAAGAUGGGUGCAUCGGCCCUCACGGGCAUCAGAUUGGCUAUUAUUUCUGGACUACAGUUACCAAAUGCCAGGAAGGUAACAC ((((....((((((((.....(((((.((....)).....((.((((......))))))..))))).....))))))))..)))).........((((((............)))))).. ( -33.90) >consensus GCAGAAUGAUGGCCAGAGUAUUACCCACAGUUAUGGUAAAGAUGGGUGCAUCGGCCCUCACGGGCAUCAGAUUAGCUAUUAUUUCUGGACUGCAGUUACCAAAUGCCAGAAAGGUAACUC .........(((((((((..(((((.........))))).(((((.((.(((.((((....))))....))))).)))))..)))))).)))..((((((............)))))).. (-30.58 = -29.82 + -0.76)
Location | 4,220,586 – 4,220,706 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.17 |
Mean single sequence MFE | -34.32 |
Consensus MFE | -28.94 |
Energy contribution | -29.14 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.48 |
Structure conservation index | 0.84 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.784305 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4220586 120 - 20766785 GAGUUACCUUUCUGGCUUUUGGUAACUGCAGUCCAGAAAUAAUAGCUAAUCUGAUGCCCGUGAGGGCCGAUGCACCCAUCUUUACCAUAACUGUGGGUAAUACUCUGGCCAUCAUUCUGC .(((((((............)))))))((((.(((((.......((..(((....((((....)))).)))))((((((..(((...)))..)))))).....)))))........)))) ( -34.90) >DroSec_CAF1 32126 120 - 1 GAGUUACCUUUCUGGCUUUUGGUAACUGCAGUCCAGAAAUAAUAGCUAAUCUGAUGCCCGUGAGGGCCGAUGCACCCAUCUUUACCAUAACUGUGGGUAAUACUCUGGCCAUCAUUCUGC .(((((((............)))))))((((.(((((.......((..(((....((((....)))).)))))((((((..(((...)))..)))))).....)))))........)))) ( -34.90) >DroSim_CAF1 59438 120 - 1 GAGUUACCUUUCUGGCAUUUGGUAACUGCAGUCCAGAAAUAAUAGCUAAUCUGAUGCCCGUGAGGGCCGAUGCACCCAUCUUUACCAUAACUGUGGGUAAUACUCUGGCCAUCAUUCUGC .(((((((............)))))))((((.(((((.......((..(((....((((....)))).)))))((((((..(((...)))..)))))).....)))))........)))) ( -34.90) >DroEre_CAF1 33637 120 - 1 GCGUUACCUUUCUGGCAUUUGGCAACUGUAGUCCAGAAAUAAUAGCCAAUCUGAUGCCCGUGAGGGCCGAUGCACCCAUCUUUACCAUAGCUGUCGGUAAUAUUUUGGCCAUUAUUCUGC ((........(((((.(((.(....)...))))))))((((((.(((((.(((((((((....)))).((((....))))............))))).......))))).))))))..)) ( -33.70) >DroYak_CAF1 34838 120 - 1 GUGUUACCUUCCUGGCAUUUGGUAACUGUAGUCCAGAAAUAAUAGCCAAUCUGAUGCCCGUGAGGGCCGAUGCACCCAUCUUUACCAUAGCUGUGGGCAAUACUCUGGCCAUAAUGCUUC .............((((((((((....((((((((....).(((((.........((((....)))).((((....)))).........)))))))))..)))....)))).)))))).. ( -33.20) >consensus GAGUUACCUUUCUGGCAUUUGGUAACUGCAGUCCAGAAAUAAUAGCUAAUCUGAUGCCCGUGAGGGCCGAUGCACCCAUCUUUACCAUAACUGUGGGUAAUACUCUGGCCAUCAUUCUGC ..((((((............))))))....(.(((((.......((..(((....((((....)))).)))))((((((..(((...)))..)))))).....))))).).......... (-28.94 = -29.14 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:19 2006