Locus 1017

Sequence ID 2R_DroMel_CAF1
Location 4,217,912 – 4,218,032
Length 120
Max. P 0.516471
window1804

overview

Window 4

Location 4,217,912 – 4,218,032
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.25
Mean single sequence MFE -28.53
Consensus MFE -20.88
Energy contribution -21.25
Covariance contribution 0.38
Combinations/Pair 1.19
Mean z-score -1.40
Structure conservation index 0.73
SVM decision value -0.03
SVM RNA-class probability 0.516471
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4217912 120 - 20766785
UUUAAGUACAAUUGCAUAAACAAGAGCUGCUGGCUCAAGUGUAGGGAAAAAGACAAGGCGAAAGCCAACUUGCAGCUUCAACUACCAAGGCAAAUGGCACGCAGAAUUCCGGCAGCAAUA
((((.(((....))).)))).....((((((((.((..((((..............(((....)))........((((.........)))).....))))...))...)))))))).... ( -30.40)
>DroSec_CAF1 29429 120 - 1
UUUAAGUACAAUUGCAUAAACAAGAGCUGCUGGCUCAAGUGUAAGGAAAAAGACAAGGCGGAAGCCAACUUGCAGCUCCAACUACCAAGGCAAAUGGCACGCAGAAUUCCGGCAGCAAUA
((((.(((....))).)))).....((((((((.((..((((..............(((....)))..((((.((......))..)))).......))))...))...)))))))).... ( -30.30)
>DroEre_CAF1 31071 100 - 1
UUUAAGUACAAUUGCAUAAACAAGAGC-------------------AAAAAGACGGAGUG-CAGCUAGCUUGCAGCUCCAACUUCCAAGGCAAAUGGCACGCAGAAUUCCGGCAGCAAUA
..........(((((..........((-------------------...(((..((((((-(((.....))))).))))..))).....)).....((.((........)))).))))). ( -21.20)
>DroYak_CAF1 32071 120 - 1
UUUAAGUACAAUUGCAUAAACAAGAGCUGCUGGCUCAAGUGCAGGGAAAAAGACGAAGCGGAAGCCAACUUGCAGCUCCAGCUUCCAAGGCAAAUGGCACGCAGAAUUCCGGCAGCAAUA
((((.(((....))).)))).....((((((((.((..((((...............((....))...((((.(((....)))..)))).......))))...))...)))))))).... ( -32.20)
>consensus
UUUAAGUACAAUUGCAUAAACAAGAGCUGCUGGCUCAAGUGUAGGGAAAAAGACAAAGCGGAAGCCAACUUGCAGCUCCAACUACCAAGGCAAAUGGCACGCAGAAUUCCGGCAGCAAUA
..........(((((........(((((((..((......))..............(((....))).....)))))))..................((.((........)))).))))). (-20.88 = -21.25 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:17 2006