Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,217,583 – 4,217,693 |
Length | 110 |
Max. P | 0.724541 |
Location | 4,217,583 – 4,217,693 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.05 |
Mean single sequence MFE | -29.28 |
Consensus MFE | -25.53 |
Energy contribution | -26.10 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.58 |
Structure conservation index | 0.87 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724541 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4217583 110 + 20766785 CAAGCCAAU---------AGCACAGAA-AAAGGACUUCUCCUUCCGUUUUGCCGUUUUUGCAUUCGAUUCGGGACUGCGAGGCUAUGUAAGAACGUGAAGGAGAAUGCAAAACAAUUUGG ...((....---------.)).((((.-....(..(((((((((((((((..((((((((((.((.......)).)))))))..)))..)))))).)))))))))..).......)))). ( -29.00) >DroSec_CAF1 29100 110 + 1 CAAGCCAAU---------AGCACAGAA-AAAGGACUUCUCCUUCCGUUUUGCCGUUUUUGCAUUCGAUUCGGGACUGCGAGUCUAUGUAAAAACGUGAAGGAGAAUGCAAAACAAUUUGG ...((....---------.)).((((.-....(..(((((((((.(.....)(((((((((((..((((((......)))))).))))))))))).)))))))))..).......)))). ( -30.70) >DroEre_CAF1 30715 120 + 1 CAAGCCAAUAGCACCAAUAGCACAGAAAAAAGGACUUCUCCUUCCAUCUUGCAGUUUUUGCAUUCGAUUCGGGACUGCAAGUCUAUGUAAAAACGUGAAGGAGAAUGCAAAACAAUUUGG ...((.....)).((((..(((.(((...(((((....)))))...)))))).(((((.((((((..(((.((((.....))))((((....)))))))...)))))))))))...)))) ( -30.40) >DroYak_CAF1 31735 111 + 1 CAAGGCAAU---------AGCACAGAAAAAAGGACUUCUCCUUCCAUUUUGCAGUUUUUGCAUUCGAUUCGGGACUGCAAGUCUAUGUAAAAACGUGAAGGAGAAUGCAAAACAAUUUGG ....((...---------.)).((((......(..((((((((((.(((((((...((((((.((.......)).))))))....)))))))..).)))))))))..).......)))). ( -27.02) >consensus CAAGCCAAU_________AGCACAGAA_AAAGGACUUCUCCUUCCAUUUUGCAGUUUUUGCAUUCGAUUCGGGACUGCAAGUCUAUGUAAAAACGUGAAGGAGAAUGCAAAACAAUUUGG ......................((((......(..(((((((((......((.((((((((((..((((((......)))))).)))))))))))))))))))))..).......)))). (-25.53 = -26.10 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:16 2006