Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,216,702 – 4,216,822 |
Length | 120 |
Max. P | 0.678171 |
Location | 4,216,702 – 4,216,822 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.75 |
Mean single sequence MFE | -30.89 |
Consensus MFE | -20.00 |
Energy contribution | -23.50 |
Covariance contribution | 3.50 |
Combinations/Pair | 1.03 |
Mean z-score | -1.96 |
Structure conservation index | 0.65 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4216702 120 + 20766785 AAUUAGUGCUUGCACAAUUCGCCAGUACAGUUGUAAAUGUAACUGUUUCUGCUGGACAACAUUGCGUAUACGCAACCCGUCCACUGGCUAAUUGAGUUAUAAUGCUAAGCGGCAAUUUAU ......((((.((.(((((.(((((((((((((......))))))).......((((....(((((....)))))...)))))))))).)))))(((......)))..))))))...... ( -38.10) >DroSec_CAF1 28229 120 + 1 AAUUAGGGCUUGCACAAUUCGCCAGUACAGUUGUAAAUGUAACUGUUUCUGCCGGACAACAUUGCGUAUACGCAACCCGUCCACUGGCUAAUUGAGUUAUAAUGCUAAGCGGCAAUUUAU .......(((.((.(((((.(((((((((((((......))))))).......((((....(((((....)))))...)))))))))).)))))(((......)))..)))))....... ( -37.50) >DroEre_CAF1 29849 106 + 1 AAUUAGGGCUUGCACAAUUCAGCAAUACAGCUGUAAAUGUAACAG--------------CCUUGCGUAUAUGCAACCCGUCCACUGGCUAAUUGAGUUAUAAUGCUAAGCGGCAAUUUAU .....(((.(((((.......((((....(((((.......))))--------------).)))).....))))))))(.((.(((((...............))).)).)))....... ( -24.06) >DroYak_CAF1 30881 120 + 1 AAUUAGUGCUUGCACAAUUCAGCAAUACAGGUGUAAAUGUAACUGUUUCUGCCGGACUACCUUGCGUAUAUGCAACCCAUCCACUGGCUAAUUGAGUUAUAAUGCUAAGCGGCAAUUUAU ......((((.((.(((((.(((......(((..((((......))))..)))(((.....(((((....)))))....)))....))))))))(((......)))..))))))...... ( -23.90) >consensus AAUUAGGGCUUGCACAAUUCACCAAUACAGUUGUAAAUGUAACUGUUUCUGCCGGACAACAUUGCGUAUACGCAACCCGUCCACUGGCUAAUUGAGUUAUAAUGCUAAGCGGCAAUUUAU .......(((.((.(((((.(((((((((((((......))))))).......((((....(((((....)))))...)))))))))).)))))(((......)))..)))))....... (-20.00 = -23.50 + 3.50)
Location | 4,216,702 – 4,216,822 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.75 |
Mean single sequence MFE | -33.06 |
Consensus MFE | -21.88 |
Energy contribution | -23.88 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.11 |
Mean z-score | -2.38 |
Structure conservation index | 0.66 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678171 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4216702 120 - 20766785 AUAAAUUGCCGCUUAGCAUUAUAACUCAAUUAGCCAGUGGACGGGUUGCGUAUACGCAAUGUUGUCCAGCAGAAACAGUUACAUUUACAACUGUACUGGCGAAUUGUGCAAGCACUAAUU ..........((((.(((........(((((.((((((((((((((((((....)))))).)))))).......((((((........)))))))))))).))))))))))))....... ( -39.20) >DroSec_CAF1 28229 120 - 1 AUAAAUUGCCGCUUAGCAUUAUAACUCAAUUAGCCAGUGGACGGGUUGCGUAUACGCAAUGUUGUCCGGCAGAAACAGUUACAUUUACAACUGUACUGGCGAAUUGUGCAAGCCCUAAUU ...(((((..((((.(((........(((((.((((((((((((((((((....)))))).)))))).......((((((........)))))))))))).))))))))))))..))))) ( -39.00) >DroEre_CAF1 29849 106 - 1 AUAAAUUGCCGCUUAGCAUUAUAACUCAAUUAGCCAGUGGACGGGUUGCAUAUACGCAAGG--------------CUGUUACAUUUACAGCUGUAUUGCUGAAUUGUGCAAGCCCUAAUU ........(((((..((...............)).)))))..((((((((((...((((((--------------((((.......))))))...)))).....))))).)))))..... ( -28.36) >DroYak_CAF1 30881 120 - 1 AUAAAUUGCCGCUUAGCAUUAUAACUCAAUUAGCCAGUGGAUGGGUUGCAUAUACGCAAGGUAGUCCGGCAGAAACAGUUACAUUUACACCUGUAUUGCUGAAUUGUGCAAGCACUAAUU ..........((((.((((.((..........(((...((((...((((......))))....))))))).....((((((((........))))..)))).)).))))))))....... ( -25.70) >consensus AUAAAUUGCCGCUUAGCAUUAUAACUCAAUUAGCCAGUGGACGGGUUGCAUAUACGCAAGGUUGUCCGGCAGAAACAGUUACAUUUACAACUGUACUGCCGAAUUGUGCAAGCACUAAUU ...(((((..((((.(((........(((((.((((((((((..(((((......)))))...)))).......((((((........)))))))))))).))))))))))))..))))) (-21.88 = -23.88 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:15 2006