Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,213,834 – 4,213,994 |
Length | 160 |
Max. P | 0.973380 |
Location | 4,213,834 – 4,213,954 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -45.85 |
Consensus MFE | -39.76 |
Energy contribution | -40.20 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -2.48 |
Structure conservation index | 0.87 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973380 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4213834 120 + 20766785 GUGUGCCUUUGUGGCGAGUGCCAAGGACUGCAAUAGGAGCACUAAUGUGCUGCCAUACAUGAGGAUCAUGGCCUGCGAUCUGAACUGCGUAAACGAAUUCGAGCAGGUUAUCUUCCUCGC ((((((((...((((....))))))).........(.(((((....))))).))))))..(((((..(((((((((....((((...((....))..)))).)))))))))..))))).. ( -44.30) >DroSec_CAF1 25492 120 + 1 GUGUGCCUUUGUGGCGAAAGCCAAGGACUGCAAUAGGAGCACCAAUGUGCUGCCCUACAUGAGGAUCAUGGCCUGCGACCUGAACUGCGUAAACGAAUUCGAGCAGGUCAUCUUCCUCAC .(((.(((...((((....)))))))...))).(((((((((....)))))..))))..((((((..(((((((((....((((...((....))..)))).)))))))))..)))))). ( -48.70) >DroEre_CAF1 27351 120 + 1 CUGUGCCUUUGUGCUGAAGGCCAAGGAUUGCAAUAGGAGCACCAAUGUGCUGCCCUACAUGAGGAUCAUGGCCUGCGACCUGAACUGCGUUAACGAGUUCGAGCAGGUCAUCGUCCUGGC .((.((((((.....))))))))......((..(((((((((....)))))..))))....(((((.(((((((((....((((((.((....)))))))).))))))))).))))).)) ( -46.90) >DroYak_CAF1 28145 120 + 1 GUGUGCCUUUGUGGAGAAGGCCAAGGACUGCAAUAGGAGCACCAAUGUGCUGCCCUACAUGAGGAUCAUGGCCUGCGAUCUGAACUGCGUCAACGAAUUCCAGCAGGUCAUCUUCCUCAC .((.((((((.....))))))))..........(((((((((....)))))..))))..((((((..(((((((((.....(((...((....))..)))..)))))))))..)))))). ( -43.50) >consensus GUGUGCCUUUGUGGCGAAGGCCAAGGACUGCAAUAGGAGCACCAAUGUGCUGCCCUACAUGAGGAUCAUGGCCUGCGACCUGAACUGCGUAAACGAAUUCGAGCAGGUCAUCUUCCUCAC .(((.(((...((((....)))))))...)))...(((((((....))))).)).....((((((..(((((((((....((((...((....))..)))).)))))))))..)))))). (-39.76 = -40.20 + 0.44)
Location | 4,213,834 – 4,213,954 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -42.38 |
Consensus MFE | -35.71 |
Energy contribution | -36.65 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.05 |
Mean z-score | -1.96 |
Structure conservation index | 0.84 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866857 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4213834 120 - 20766785 GCGAGGAAGAUAACCUGCUCGAAUUCGUUUACGCAGUUCAGAUCGCAGGCCAUGAUCCUCAUGUAUGGCAGCACAUUAGUGCUCCUAUUGCAGUCCUUGGCACUCGCCACAAAGGCACAC ..(((((..((..((((((((((((((....)).))))).))..)))))..))..))))).((((.((.(((((....)))))))...))))(((((((((....))))...))).)).. ( -40.90) >DroSec_CAF1 25492 120 - 1 GUGAGGAAGAUGACCUGCUCGAAUUCGUUUACGCAGUUCAGGUCGCAGGCCAUGAUCCUCAUGUAGGGCAGCACAUUGGUGCUCCUAUUGCAGUCCUUGGCUUUCGCCACAAAGGCACAC (((((((..(((.((((((((((((((....)).))))).))..))))).)))..)))))))((((((.(((((....))))))))..))).(((((((((....))))...))).)).. ( -44.40) >DroEre_CAF1 27351 120 - 1 GCCAGGACGAUGACCUGCUCGAACUCGUUAACGCAGUUCAGGUCGCAGGCCAUGAUCCUCAUGUAGGGCAGCACAUUGGUGCUCCUAUUGCAAUCCUUGGCCUUCAGCACAAAGGCACAG (((........(((((....(((((((....)).))))))))))((((((((.(((.....(((((((.(((((....))))))))..)))))))..))))))...)).....))).... ( -41.90) >DroYak_CAF1 28145 120 - 1 GUGAGGAAGAUGACCUGCUGGAAUUCGUUGACGCAGUUCAGAUCGCAGGCCAUGAUCCUCAUGUAGGGCAGCACAUUGGUGCUCCUAUUGCAGUCCUUGGCCUUCUCCACAAAGGCACAC (((((((..(((.(((((..(((((((....)).))))).....))))).)))..)))))))((((((.(((((....))))))))..)))......(((((((.......))))).)). ( -42.30) >consensus GCGAGGAAGAUGACCUGCUCGAAUUCGUUUACGCAGUUCAGAUCGCAGGCCAUGAUCCUCAUGUAGGGCAGCACAUUGGUGCUCCUAUUGCAGUCCUUGGCCUUCGCCACAAAGGCACAC ..(((((..(((.(((((..(((((((....)).))))).....))))).)))..))))).(((((((.(((((....))))))))..)))).....(((((((.......))))).)). (-35.71 = -36.65 + 0.94)
Location | 4,213,874 – 4,213,994 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.56 |
Mean single sequence MFE | -38.80 |
Consensus MFE | -31.58 |
Energy contribution | -32.45 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.09 |
Mean z-score | -1.58 |
Structure conservation index | 0.81 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648867 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4213874 120 + 20766785 ACUAAUGUGCUGCCAUACAUGAGGAUCAUGGCCUGCGAUCUGAACUGCGUAAACGAAUUCGAGCAGGUUAUCUUCCUCGCUCUGUUCAUGGGUCUGUGCUACGAGAUACUUGUUCUGCUG ......(..(.(((..(((((((((..(((((((((....((((...((....))..)))).)))))))))..))))))...))).....)))..)..).(((((...)))))....... ( -32.90) >DroSec_CAF1 25532 120 + 1 ACCAAUGUGCUGCCCUACAUGAGGAUCAUGGCCUGCGACCUGAACUGCGUAAACGAAUUCGAGCAGGUCAUCUUCCUCACUCUGUUCAUGGGUCUCUGCUACGAGAUACUUGUUCUGCUG ...........((((.(((((((((..(((((((((....((((...((....))..)))).)))))))))..))))))...)))....))))....((.(((((...)))))...)).. ( -37.60) >DroEre_CAF1 27391 120 + 1 ACCAAUGUGCUGCCCUACAUGAGGAUCAUGGCCUGCGACCUGAACUGCGUUAACGAGUUCGAGCAGGUCAUCGUCCUGGCACUCUUCAUGGCUCUCUGCUAUGGGAUACUUGUGCUGCUG ....(((((......))))).(((((.(((((((((....((((((.((....)))))))).))))))))).)))))((((((((.((((((.....))))))))).....))))).... ( -45.30) >DroYak_CAF1 28185 120 + 1 ACCAAUGUGCUGCCCUACAUGAGGAUCAUGGCCUGCGAUCUGAACUGCGUCAACGAAUUCCAGCAGGUCAUCUUCCUCACAUUGUUCAUGGCCCUCUGCUAUGAGAUAUUUGUGCUGCUG ........((.((.......(((((..(((((((((.....(((...((....))..)))..)))))))))..)))))(((...((((((((.....)))))))).....))))).)).. ( -39.40) >consensus ACCAAUGUGCUGCCCUACAUGAGGAUCAUGGCCUGCGACCUGAACUGCGUAAACGAAUUCGAGCAGGUCAUCUUCCUCACACUGUUCAUGGCUCUCUGCUACGAGAUACUUGUGCUGCUG ...........((...(((((((((..(((((((((....((((...((....))..)))).)))))))))..)))))).....((((((((.....)))))))).....)))...)).. (-31.58 = -32.45 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:05 2006