Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,347,653 – 1,347,803 |
Length | 150 |
Max. P | 0.595986 |
Location | 1,347,653 – 1,347,770 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.52 |
Mean single sequence MFE | -32.45 |
Consensus MFE | -20.86 |
Energy contribution | -22.55 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.08 |
Mean z-score | -1.85 |
Structure conservation index | 0.64 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1347653 117 - 20766785 UCCCAGUACCAGCUGACUUAACGUUGGCACAAAUCAAAGGUUAUCAUAGCCCAUCAGUCCAUCAUCCCGGACUGAAGGUUGGACCCGCAC--CUUUCACUGAGCACAAAG-CCCCCGCCC ...((((....((..((.....))..)).......((((((.....(((((..(((((((........))))))).))))).......))--)))).)))).((.....)-)........ ( -31.00) >DroSec_CAF1 65967 118 - 1 UUCAUGUAGCAGCUGACUUAACGUUGGCACAAAUCAAAGGUUAUCAUAGCCCUUCAGUCCAUCAUCCUGGACUGAACGGUGGAGCCGUUCCGCUUCCACUGAGCACAAUG-CCC-CGCCC ....(((.((.((..((.....))..))..........(((((...))))).(((((((((......)))))))))(((((((((......)).))))))).)))))...-...-..... ( -37.20) >DroSim_CAF1 44124 117 - 1 UUCAUGUAGCAACUGACUUAACGUUGGCACAAAUCAAAGGUUAUCAUAGCCCAUCAGUCCAUCAUCCUGGACUGAACGGUGGAGCCGUUCCACUUCCACUGAGCACAAUG-CCC-CGCC- .(((.((....))))).....(((((((..........(((((...)))))..((((((((......)))))))).((((((((.........)))))))).)).)))))-...-....- ( -30.70) >DroYak_CAF1 34517 117 - 1 UUCAUGAACCAGCUGACAUAACGUAGGCACAAAUCAAAGGUUAUCAUAGUCAAUCAGUCCGUUAUCCUGGACUGAAGGUUGGAGGCGCAC--UUUCCACUGUGCACAAAGACCC-CGCCC ........((((((((((((((.(.............).)))))....)))..((((((((......)))))))).)))))).(((((((--........)))).....(....-)))). ( -30.92) >consensus UUCAUGUACCAGCUGACUUAACGUUGGCACAAAUCAAAGGUUAUCAUAGCCCAUCAGUCCAUCAUCCUGGACUGAACGGUGGAGCCGCAC__CUUCCACUGAGCACAAAG_CCC_CGCCC ...........((((((.....))))))..........(((............((((((((......)))))))).((((((((.........))))))))...............))). (-20.86 = -22.55 + 1.69)
Location | 1,347,690 – 1,347,803 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 85.84 |
Mean single sequence MFE | -31.98 |
Consensus MFE | -21.48 |
Energy contribution | -24.72 |
Covariance contribution | 3.25 |
Combinations/Pair | 1.09 |
Mean z-score | -1.66 |
Structure conservation index | 0.67 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.595986 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1347690 113 + 20766785 AACCUUCAGUCCGGGAUGAUGGACUGAUGGGCUAUGAUAACCUUUGAUUUGUGCCAACGUUAAGUCAGCUGGUACUGGGAAAUGAUACCAAGCUUUUGACGAACGGGUCUAAG ..((.((((((((......)))))))).))...........(((.(((((((.....(((((((..(((((((((........).)))).))))))))))).))))))).))) ( -34.50) >DroSec_CAF1 66005 113 + 1 ACCGUUCAGUCCAGGAUGAUGGACUGAAGGGCUAUGAUAACCUUUGAUUUGUGCCAACGUUAAGUCAGCUGCUACAUGAAAGUGAUACCAAGCUUUUGACGAACGAGUCUAAG .((.(((((((((......))))))))).))..........(((.(((((((.....(((((((..((((..(((((....))).))...))))))))))).))))))).))) ( -36.30) >DroSim_CAF1 44161 113 + 1 ACCGUUCAGUCCAGGAUGAUGGACUGAUGGGCUAUGAUAACCUUUGAUUUGUGCCAACGUUAAGUCAGUUGCUACAUGAAAGUGAUACCCAGCUUUUGACGAACGAGUCUAAG .((((.(((((((......)))))))))))...........(((.(((((((.....(((((((..(((((...(((....))).....)))))))))))).))))))).))) ( -33.60) >DroYak_CAF1 34554 103 + 1 AACCUUCAGUCCAGGAUAACGGACUGAUUGACUAUGAUAACCUUUGAUUUGUGCCUACGUUAUGUCAGCUGGUUCAUGAAAAUGAUACCAAACUU-UGACGAGC--------- ..(..(((((((........)))))))..)............................(((.((((((.((((((((....)))).))))....)-))))))))--------- ( -23.50) >consensus AACCUUCAGUCCAGGAUGAUGGACUGAUGGGCUAUGAUAACCUUUGAUUUGUGCCAACGUUAAGUCAGCUGCUACAUGAAAAUGAUACCAAGCUUUUGACGAACGAGUCUAAG .....((((((((......))))))))..(((...(((........)))...)))..(((((((..(((((((((((....))).)))).)))))))))))............ (-21.48 = -24.72 + 3.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:10 2006