Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,210,757 – 4,210,916 |
Length | 159 |
Max. P | 0.749457 |
Location | 4,210,757 – 4,210,876 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.40 |
Mean single sequence MFE | -27.71 |
Consensus MFE | -21.25 |
Energy contribution | -21.77 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.10 |
Mean z-score | -1.64 |
Structure conservation index | 0.77 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633896 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4210757 119 - 20766785 GCUUGAAGGACCUUCUGCAAUCA-AAUCGGCGGCUUAAGCUGAACAUAAAUCUUGCAUUGAAUGGCGGGAGAACUUUCACCUGCUCCGCCAUAAAUUUCCAUUGCAAUUCCACCACUCAA .......(((.....((((((.(-(((.(((((....((.((((......((((((........)))))).....)))).))...)))))....))))..))))))..)))......... ( -25.70) >DroSec_CAF1 22497 119 - 1 GCUUGAAGGACCUCCUGCAAUCA-AAUCGGCGGCUUAAGCUGCACAUAAAUCUUGCAUCGAAUGGCGGGAGAACUUUCACCUGCUCCGCCAUAAAUUUCCAUUCCAAUUCCACCACUCAA ((.((((((..(((((((..((.-.....(((((....))))).((.......))....))...)))))))..))))))...)).................................... ( -27.70) >DroSim_CAF1 53050 119 - 1 GCUUGAAGGCCCUCCUGCAAUCA-AAUCGGCGGCUUAAGCUGCACAUAAAUCUUGCAUCGAAUGGCGGGAGAACUUUCACCUGCUCCGCCAUAAAUUUCCAUUCCAAUUCCACCACUCAA ((.((((((..(((((((..((.-.....(((((....))))).((.......))....))...)))))))..))))))...)).................................... ( -28.00) >DroEre_CAF1 24403 118 - 1 GCUUAGACGACCUUCUGCACUCAGAAUCUGCGGCUUUAGCCACACAUAAAUCUUGCAUUGAAUGGCGGGA-AACUUUCACCUGCUCCGCCAUUAGUUUCCAUUCCA-UUCUACCACUCAA ((..(((.....(((((....)))))..((.(((....))).))......))).))...((((((..(((-((((..................)))))))...)))-))).......... ( -26.57) >DroYak_CAF1 25085 120 - 1 GCUUGGAGAACCUUCUGCAAUCAGAAUCUGCGGCUUAAGCUGCACAUAAAUCUUGCACUGAAUGGCGGGAGAACUUUCACCUGCUCCGCCAUUAAUUUUCAUUCCAAUUCAACCACUCAA ..((((((.......(((((........((((((....))))))........)))))...(((((((((((.........)).).))))))))........))))))............. ( -30.59) >consensus GCUUGAAGGACCUUCUGCAAUCA_AAUCGGCGGCUUAAGCUGCACAUAAAUCUUGCAUUGAAUGGCGGGAGAACUUUCACCUGCUCCGCCAUAAAUUUCCAUUCCAAUUCCACCACUCAA .......(((.....(((((.........(((((....))))).........)))))....((((((((...............)))))))).....))).................... (-21.25 = -21.77 + 0.52)
Location | 4,210,797 – 4,210,916 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.37 |
Mean single sequence MFE | -32.99 |
Consensus MFE | -24.63 |
Energy contribution | -25.63 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.07 |
Mean z-score | -1.86 |
Structure conservation index | 0.75 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.749457 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4210797 119 - 20766785 GUAAGUGAAUUCAUUUUGCCCCCAAGCCGAAAACUAAGCGGCUUGAAGGACCUUCUGCAAUCA-AAUCGGCGGCUUAAGCUGAACAUAAAUCUUGCAUUGAAUGGCGGGAGAACUUUCAC ....(((((.........((..(((((((.........)))))))..))..(((((((..(((-(.(((((.......))))).((.......))..))))...)))))))....))))) ( -33.30) >DroSec_CAF1 22537 119 - 1 GUAAGUGAAUUCAUUUUGCCCCCAAGCCGAAAACUAAGCGGCUUGAAGGACCUCCUGCAAUCA-AAUCGGCGGCUUAAGCUGCACAUAAAUCUUGCAUCGAAUGGCGGGAGAACUUUCAC ....(((((.........((..(((((((.........)))))))..))..(((((((..((.-.....(((((....))))).((.......))....))...)))))))....))))) ( -36.50) >DroSim_CAF1 53090 119 - 1 GUAAGUGAAUUCAUUUUGCCCCCAAGCCGAAAACUAAGCGGCUUGAAGGCCCUCCUGCAAUCA-AAUCGGCGGCUUAAGCUGCACAUAAAUCUUGCAUCGAAUGGCGGGAGAACUUUCAC ....(((((........(((..(((((((.........)))))))..))).(((((((..((.-.....(((((....))))).((.......))....))...)))))))....))))) ( -39.40) >DroEre_CAF1 24442 110 - 1 ---------UUCAUUUCGCCCUCAAGCCGAAACCUAAGCCGCUUAGACGACCUUCUGCACUCAGAAUCUGCGGCUUUAGCCACACAUAAAUCUUGCAUUGAAUGGCGGGA-AACUUUCAC ---------....(..((((.((((((........(((((((..(((.....(((((....)))))))))))))))..................)).))))..))))..)-......... ( -24.87) >DroYak_CAF1 25125 111 - 1 ---------UUCAUUUCGCCCCCAAGCCGAAACCUAAGCCGCUUGGAGAACCUUCUGCAAUCAGAAUCUGCGGCUUAAGCUGCACAUAAAUCUUGCACUGAAUGGCGGGAGAACUUUCAC ---------(((.(..((((.((((((.(.........).))))))......((((((((........((((((....))))))........)))))..))).))))..))))....... ( -30.89) >consensus GUAAGUGAAUUCAUUUUGCCCCCAAGCCGAAAACUAAGCGGCUUGAAGGACCUUCUGCAAUCA_AAUCGGCGGCUUAAGCUGCACAUAAAUCUUGCAUUGAAUGGCGGGAGAACUUUCAC .........(((.(((((((..(((((((.........)))))))..........(((((.........(((((....))))).........)))))......))))))))))....... (-24.63 = -25.63 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:57 2006