Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,210,467 – 4,210,561 |
Length | 94 |
Max. P | 0.964895 |
Location | 4,210,467 – 4,210,561 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 85.71 |
Mean single sequence MFE | -22.60 |
Consensus MFE | -16.60 |
Energy contribution | -18.27 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.00 |
Mean z-score | -3.52 |
Structure conservation index | 0.73 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964895 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4210467 94 + 20766785 ----------UGGUGAAAUUGAAAUAUAAUCUUAU--------CUGCUUCAGCAGCACUUGCAUAAUUGUAAGAGAUAAGUCUUAUAAUCAUAAUUUCACAUUAUUUCACUA ----------..(((((((((...(((((.(((((--------(((((.....))).((((((....)))))))))))))..)))))....)))))))))............ ( -24.50) >DroSec_CAF1 22199 112 + 1 UUACUCUACAUGGCGAAAUUGAAAUAUAAUCUUAUCUAUAUCUCUGCUUCAGCAACACUUGCAUAAUUGUAAGAGAUAAGUCUUAUAAUCAUAAUUUCACAUUAUUUCACUG .........(((..(((((((...(((((.(((((((.......(((....)))...((((((....)))))))))))))..)))))....))))))).))).......... ( -21.30) >DroSim_CAF1 52752 112 + 1 UUACUCUACAUGGCGAAAUUGAAUUAUAAUCUUAUCUAUAUCUCUGCUUCAGCAGCAAAUGCAUAAUUGUAAGAGAUAAGUCUUAUAAUCAUAAUUUCACAUUAUUUCACUA .........(((..(((((((.(((((((.(((((((......((((....))))....((((....))))..)))))))..)))))))..))))))).))).......... ( -22.00) >consensus UUACUCUACAUGGCGAAAUUGAAAUAUAAUCUUAUCUAUAUCUCUGCUUCAGCAGCACUUGCAUAAUUGUAAGAGAUAAGUCUUAUAAUCAUAAUUUCACAUUAUUUCACUA ..............(((((((...(((((.(((((((......((((....))))..((((((....)))))))))))))..)))))....))))))).............. (-16.60 = -18.27 + 1.67)
Location | 4,210,467 – 4,210,561 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 85.71 |
Mean single sequence MFE | -21.40 |
Consensus MFE | -18.54 |
Energy contribution | -18.43 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -1.75 |
Structure conservation index | 0.87 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744241 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4210467 94 - 20766785 UAGUGAAAUAAUGUGAAAUUAUGAUUAUAAGACUUAUCUCUUACAAUUAUGCAAGUGCUGCUGAAGCAG--------AUAAGAUUAUAUUUCAAUUUCACCA---------- ..((((((((((((((...(((((((.(((((......))))).)))))))......((((....))))--------......)))))))...)))))))..---------- ( -20.50) >DroSec_CAF1 22199 112 - 1 CAGUGAAAUAAUGUGAAAUUAUGAUUAUAAGACUUAUCUCUUACAAUUAUGCAAGUGUUGCUGAAGCAGAGAUAUAGAUAAGAUUAUAUUUCAAUUUCGCCAUGUAGAGUAA ..(((((((..........(((((((.(((((......))))).))))))).......(((....)))(((((((((......))))))))).)))))))............ ( -20.20) >DroSim_CAF1 52752 112 - 1 UAGUGAAAUAAUGUGAAAUUAUGAUUAUAAGACUUAUCUCUUACAAUUAUGCAUUUGCUGCUGAAGCAGAGAUAUAGAUAAGAUUAUAAUUCAAUUUCGCCAUGUAGAGUAA ............((((((((..((((((((..(((((((.........(((..((((((.....))))))..)))))))))).)))))))).))))))))............ ( -23.50) >consensus UAGUGAAAUAAUGUGAAAUUAUGAUUAUAAGACUUAUCUCUUACAAUUAUGCAAGUGCUGCUGAAGCAGAGAUAUAGAUAAGAUUAUAUUUCAAUUUCGCCAUGUAGAGUAA ..((((((((((((((...(((((((.(((((......))))).)))))))......((((....))))..............)))))))...)))))))............ (-18.54 = -18.43 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:55 2006