Locus 1005

Sequence ID 2R_DroMel_CAF1
Location 4,208,448 – 4,208,568
Length 120
Max. P 0.531764
window1777

overview

Window 7

Location 4,208,448 – 4,208,568
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.33
Mean single sequence MFE -46.00
Consensus MFE -41.00
Energy contribution -41.28
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -1.14
Structure conservation index 0.89
SVM decision value -0.00
SVM RNA-class probability 0.531764
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4208448 120 - 20766785
UUGCCGGAAUCAUCCGACUCGUCGCACUUCUUCUUGCUAACGCAGACCUCGUGGCUCCCGCAGGUGCGGAUCGAGAGGAUCGCCGGUGCGAGGGAAAUCAAUGCCAGACUGAUCAGCAAC
((((((((....)))).(((.(((((((((((((((....(((..((((.((((...)))))))))))...)))))))).....)))))))))).....................)))). ( -40.70)
>DroSec_CAF1 20184 120 - 1
UUGCCGGAAUCAUCCGUCUCGUCGCACUUCUUCUUGCUAACGCAGACCUCGUGGCUCCCGCAGGUGCGGAUCGAGAUGCUCGCCGGUGCGAGGGAGAUCAGUGCCAGACUGAUCAGCAAC
((((........(((((((((((((((((....((((....)))).....((((...))))))))))))..)))))).(((((....))))))))(((((((.....))))))).)))). ( -47.80)
>DroSim_CAF1 50646 120 - 1
UUGCCGGAAUCAUCCGUCUCGUCGCACUUCUUCUUGCUAACGCAGACCUCGUGGCUCCCGCAGGUGCGGAUCGAGAGGCUCGCCGGUGCGAGGGAAACCAGUGCCAGACUGAUCAGCAAC
..((((((....))).(((((((((((((....((((....)))).....((((...))))))))))))..))))))))..((.((..(..((....)).)..)).((....)).))... ( -44.40)
>DroEre_CAF1 22456 120 - 1
UUGCCGGAAUCAUCCGUCUCGUCGCACCUUUGCUUGCUAACGCAAACCUGGUGGCUCCCGCAGGUGCGGAUCGAGUGACCCGCUGGUGCGAGGGAAACCAGUGCCAGACUGAUCAGCAAC
((((.(((....)))((((..(((((((...((((((....))))....(((.((((((((....))))...)))).))).)).)))))))((....))......))))......)))). ( -49.40)
>DroYak_CAF1 22709 120 - 1
UUGCCGGAAUCAUCCGUCUCGUCGCACUUCUUCUUGCUAACGCAGACCUCGUGGCUACCGCAGGUGCGGAUCGAGAGGCCCGCCGGUGCGAGGGAAAUCAGUGCCAGACUGAUCAGCAAC
((((((((....))))((((.(((((((.....((((....))))((((.((((...))))))))((((..(....)..)))).))))))))))).((((((.....))))))..)))). ( -47.70)
>consensus
UUGCCGGAAUCAUCCGUCUCGUCGCACUUCUUCUUGCUAACGCAGACCUCGUGGCUCCCGCAGGUGCGGAUCGAGAGGCUCGCCGGUGCGAGGGAAAUCAGUGCCAGACUGAUCAGCAAC
((((((((....))))((((.(((((((.....((((....))))((((.((((...))))))))((((.((....)).)))).))))))))))).((((((.....))))))..)))). (-41.00 = -41.28 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:51 2006