Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,207,635 – 4,207,728 |
Length | 93 |
Max. P | 0.554509 |
Location | 4,207,635 – 4,207,728 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.04 |
Mean single sequence MFE | -33.98 |
Consensus MFE | -19.60 |
Energy contribution | -20.35 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.29 |
Mean z-score | -1.72 |
Structure conservation index | 0.58 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554509 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4207635 93 + 20766785 UA-----GAACCUGCU-------UUCUGGGAAUCUAAGCUCGGAAGAGCACGUAAGAGAG--------------A-AGUGAAGAGGAGUGGGUUUUCCCAACGCUAUUUAGUUACACAGC .(-----(((((..((-------((((..(..(((..((((....)))).(....)..))--------------)-..)..))).)))..))))))...(((........)))....... ( -24.90) >DroSec_CAF1 19423 114 + 1 UA-----GAACCUGCUCGGAAGAUUCUUGGAAUCUUAGUUCGAAAGAGCACGUAAGAGAGAAAGGCUUAUAAAGA-AGUGAAGAGGGGUGGGUUUUCCCAUCCCCAUCUGGGCCCACAGC ..-----......(((((((....((((.(..((((.((((....))))..(((((.........))))).))))-..).))))((((((((....))))))))..)))))))....... ( -39.00) >DroSim_CAF1 45574 118 + 1 UAGAAUAGAACCUGCUCGGAAGAUUCUGGGAAUCUCAGUUCGAAAGAGCACGUAAGAGAGAAAGG-UUAUAAAGA-AGUGAAGAGGGGUGGGUUUUCCCAUCUAUACCUAGGCCCACAGC ........(((((.((((((....))))))..((((.((((....)))).(....).)))).)))-)).......-.(((...(((((((((....))))))....))).....)))... ( -35.10) >DroEre_CAF1 21666 115 + 1 UA-----GAACCUGCUCGGAAGUAUCUGGGAACCGCAGCGCGAAAGCGAACGUGAGAGAUACAGCCUUAUAGAGAGAGUGAAGAGGUCUGGGUUUUCCCAUCCCGAUCUAGGCACGCAGC ..-----....((((..((..(((((((....)(((..(((....)))...)))..))))))..))...........(((...(((((((((....))))....)))))...))))))). ( -36.90) >consensus UA_____GAACCUGCUCGGAAGAUUCUGGGAAUCUCAGCUCGAAAGAGCACGUAAGAGAGAAAGG_UUAUAAAGA_AGUGAAGAGGGGUGGGUUUUCCCAUCCCUAUCUAGGCACACAGC ...........(((..(....)...(((((.......((((....))))...................................((((((((....))))))))..))))).....))). (-19.60 = -20.35 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:49 2006