Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,203,772 – 4,203,892 |
Length | 120 |
Max. P | 0.828890 |
Location | 4,203,772 – 4,203,892 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.42 |
Mean single sequence MFE | -37.92 |
Consensus MFE | -29.58 |
Energy contribution | -29.70 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.27 |
Mean z-score | -1.83 |
Structure conservation index | 0.78 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4203772 120 + 20766785 UGGAUGGGGUCUGACAGACAACAACAGCGGCAUGUCCAACUACCUGAACUGCGUCGAUGUCCAGAUUAUUGACAACAACGACUGCCGCAACUACUACGGUAGCAACUACAUCACCGACAA ..((((..((.((.............((((((.(((((......))......(((((((.......)))))))......)))))))))..((((....))))))))..))))........ ( -33.30) >DroSec_CAF1 15581 120 + 1 UGGAUGGGGUCUGACCGACAACAACAGCGGCAUGUCCAACUACCUGAACAGCGUCGAUGUCCAGAUCAUGGACAACAACGACUGCCGCAACUACUACGGUGGCAACUACGUCAUCGACAA (((.((..(((.....)))..))...(((((((((.((......)).)))..((((.((((((.....))))))....))))))))))..)))...(((((((......))))))).... ( -39.10) >DroSim_CAF1 41427 120 + 1 UGGAUGGGGUCUGACCGACAACAACAGCGGCAUGUCCAACUACCUGAACAGCGUCGAUGUCCAGAUCAUGGACAACAACGACUGCCGCAACUACUACGGUGGCAACUACGUUAUCGACAA (((.((..(((.....)))..))...(((((((((.((......)).)))..((((.((((((.....))))))....))))))))))..)))...(((((((......))))))).... ( -37.00) >DroYak_CAF1 17769 120 + 1 UGGCUGGGGUCUGACCGACAACAACAGCGGCAUGUCCAACUACCUGAACAGCGUGGAUGUCCAGAUCGCGGACAACAACGACUGCCGCAACUACUACGGUGGCAACUACGUCACCGACAA ((..((..(((.....)))..)).))((((((.(((...((((((....)).)))).(((((.......))))).....)))))))))........(((((((......))))))).... ( -43.00) >DroAna_CAF1 13780 120 + 1 CGGAUGGGGCCGCACUGAUAACGACAGUGGCAUGUCCAACUACCUCAACUGUGUGGAUGUCCAGGUCAUGGACAACAACGAUUGUCGCAACUACUUUGGCGGCUACUACAUCACUGACAA ..((((.((((((........(((((((.(..(((....(((((......).)))).((((((.....))))))))).).)))))))(((.....)))))))))....))))........ ( -37.20) >consensus UGGAUGGGGUCUGACCGACAACAACAGCGGCAUGUCCAACUACCUGAACAGCGUCGAUGUCCAGAUCAUGGACAACAACGACUGCCGCAACUACUACGGUGGCAACUACGUCACCGACAA ..(.((..(((.....)))..)).).((((((.(((((......))......((.(.((((((.....)))))).).)))))))))))........(((((((......))))))).... (-29.58 = -29.70 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:45 2006