Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,200,021 – 4,200,126 |
Length | 105 |
Max. P | 0.976580 |
Location | 4,200,021 – 4,200,126 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -28.03 |
Consensus MFE | -26.97 |
Energy contribution | -26.72 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.11 |
Mean z-score | -1.38 |
Structure conservation index | 0.96 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976580 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4200021 105 - 20766785 CUCCUUUAGCGCAAUUGUGUCUCGGACAUGAAUUACGUUCACCGACAAUUAAUUUCAAGUGAAAAUGUGCUAAAACUUUUAAUUGGGCAGCCAAGUGGCUGGCAG--------------- ....(((((((((((((....((((...(((((...))))))))))))))..((((....))))..))))))))...........(.(((((....))))).)..--------------- ( -28.30) >DroSec_CAF1 11808 105 - 1 CUCCUUUAUCGCAAUUGUGUCUCGGACAUGAAUUACGUUCACCGACAAUUAUUUUCAAGUGAAAAUGUGCUAAAACUUUUAAUUGGGCAGCCAAAUGGCUGGCAG--------------- ....((((.((((((((....((((...(((((...))))))))))))))((((((....))))))))).))))...........(.(((((....))))).)..--------------- ( -23.50) >DroSim_CAF1 35966 105 - 1 CUCCUUUAGCGCAAUUGUGUCUCGGACAUGAAUUACGUUCACCGACAAUUAAUUUCAAGUGAAAAUGUGCUAAAACUUUUAAUUGGGCAGCCAAGUGGCUGGCAG--------------- ....(((((((((((((....((((...(((((...))))))))))))))..((((....))))..))))))))...........(.(((((....))))).)..--------------- ( -28.30) >DroEre_CAF1 14374 105 - 1 CUCCUUUAGCGCAAUUGUGUCUCGGACAUGAAUUACGUUCACCGACAAUUAAUUUCAAGUGAAAAUGUGCUAAAACUUUUAAUUGGGCAGCCAAGUGGCUGGCAG--------------- ....(((((((((((((....((((...(((((...))))))))))))))..((((....))))..))))))))...........(.(((((....))))).)..--------------- ( -28.30) >DroYak_CAF1 13531 105 - 1 CUCCUUUAGCGCAAUUGUGUCUCGGACAUGAAUUACGUUCACCGACAAUUAAUUUCAAGUGAAAAUGUGCUAAAACUUUUAAUUGGGCAGCCAAGUGGCUGGCAG--------------- ....(((((((((((((....((((...(((((...))))))))))))))..((((....))))..))))))))...........(.(((((....))))).)..--------------- ( -28.30) >DroAna_CAF1 10563 120 - 1 CUCCUUUAGCGCAUUCGUGUCUCGGACAUGAAUUACGUUUACCGACAAUUAAUUUCAAGUGAAAAUGUGCUAAAACUUUUAAUUGGGCAGCCAAGUGGUUGGCAGAGUGAGAAGGUCAUG ....(((((((((((((((((...))))))))....................((((....)))).))))))))).(((((.(((.(.(((((....))))).)..))).)))))...... ( -31.50) >consensus CUCCUUUAGCGCAAUUGUGUCUCGGACAUGAAUUACGUUCACCGACAAUUAAUUUCAAGUGAAAAUGUGCUAAAACUUUUAAUUGGGCAGCCAAGUGGCUGGCAG_______________ ....(((((((((.(((((((...)))))))......(((((................)))))..)))))))))...........(.(((((....))))).)................. (-26.97 = -26.72 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:44 2006