Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,347,312 – 1,347,431 |
Length | 119 |
Max. P | 0.997530 |
Location | 1,347,312 – 1,347,431 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.21 |
Mean single sequence MFE | -41.50 |
Consensus MFE | -33.54 |
Energy contribution | -35.16 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.08 |
Mean z-score | -3.03 |
Structure conservation index | 0.81 |
SVM decision value | 2.88 |
SVM RNA-class probability | 0.997530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1347312 119 + 20766785 CUGGCAAAGUUUCGGCCCGGCCAUCAUAAACGUCAGAGGACCCUUUGCCAUAAUAGCCCCGAAAACUUGGAA-GGGGGCAUAUUAAUGGUGCCCGGGCUGACACAUUGUAAAUUCAAAUG ...((((.((.(((((((((.((((((....(.(((((....))))).).((((((((((............-.))))).))))))))))).))))))))).)).))))........... ( -47.42) >DroSec_CAF1 65620 118 + 1 CUGGCAAAGUUUCGGCCCGGCCAUCAUAAACGUCCGAGGACCCUCUGCCACAAUAGCCCCGAA-ACCUGGGA-GGAGGCAUAUUAAUGGUGCCCGGGCUGACACAUUGUAAAUUCAAAUG ...((((.((.(((((((((.((((((....(((....)))(((((((.......))((((..-...)))).-))))).......)))))).))))))))).)).))))........... ( -43.90) >DroSim_CAF1 43784 118 + 1 CUGGCAAAGUUUCGGCCCGGCCAUCAUAAACGUCAGAGGACCCUCUGCCACAAUAGCCCCGAA-ACCUGGGA-GGAGGCAUAUUAAUGGUGCCCGGGCUGACACAUUGUAAAUUCAAAUG ...((((.((.(((((((((.((((((....(.(((((....))))).)..(((((((((...-........-)).))).)))).)))))).))))))))).)).))))........... ( -45.60) >DroEre_CAF1 46710 115 + 1 CUGGCAAAGUUUCGGGCCGACCACCAUAAACGUCAGAGGACCCU-UGCCACAAUAGCCCCAAA-ACGGGG---GGAGGCAUAUUAAUGGUGCCCGGGCUGACACAUUGUAAAUUCAAAUG ...((((.((.((((.(((..((((((....(((....)))...-((((.(.....((((...-..))))---.).)))).....))))))..))).)))).)).))))........... ( -38.10) >DroYak_CAF1 34195 104 + 1 CCGGCAAAGUUUCGGACCGGCCAUCAUAAACGUCAG---------------AAUAGCCCCGAA-ACCUGGGAGUAAGGCAUAUUAAUGGUGCCCGGUCUGACACAUUGUAAAUUCAAAUG ...((((.((.(((((((((.((((((.((.(((..---------------....((((((..-...)))).))..)))...)).)))))).))))))))).)).))))........... ( -32.50) >consensus CUGGCAAAGUUUCGGCCCGGCCAUCAUAAACGUCAGAGGACCCU_UGCCACAAUAGCCCCGAA_ACCUGGGA_GGAGGCAUAUUAAUGGUGCCCGGGCUGACACAUUGUAAAUUCAAAUG ...((((.((.(((((((((.((((((....(.(((((....))))).)..(((((((((.............)).))).)))).)))))).))))))))).)).))))........... (-33.54 = -35.16 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:08 2006