Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,884,320 – 2,884,425 |
Length | 105 |
Max. P | 0.969762 |
Location | 2,884,320 – 2,884,425 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 95.24 |
Mean single sequence MFE | -36.78 |
Consensus MFE | -32.60 |
Energy contribution | -32.60 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.19 |
Mean z-score | -1.70 |
Structure conservation index | 0.89 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.969762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2884320 105 - 22407834 AUAGUUUCGACUGAUUUGCAUCGCAAGUGGGUGGAGAACAGGAUGCGGGCAAACCGGAACCGGUUGCAAGUGAGUGCAGAUAGUGCCUGGCUGCUAACGUGGCCU ....((((.(((.((((((...)))))).))).)))).........((((((((((....)))))(((......)))......)))))(((..(....)..))). ( -39.30) >DroSec_CAF1 3046 105 - 1 AUAGUUUCGUCUGAUUUGCAUCGCAUGUGGGUGGAGAACAGGAUGCGAGCAAACCGGAACCGGUUGCAAGUGAGUGCAGAAAGUGCCUGGCUGCUAACGUGGCCU ...((....(((((((..(.((((((.(..((.....)).).))))))((((.(((....)))))))..)..))).))))....))..(((..(....)..))). ( -39.00) >DroSim_CAF1 3106 105 - 1 AUAGUUUCGUCUGAUUUGCAUCGCAAGUGGGUGGAGAACAGGAUGCGAGCAAACCGGAACCGGUUGCAAGUGAGUGCAGAAAGUGCCUGGCUGCUAACGUGGCCU ...((....(((((((..(.(((((.....((.....))....)))))((((.(((....)))))))..)..))).))))....))..(((..(....)..))). ( -36.20) >DroEre_CAF1 3055 105 - 1 AUAGUUUCGUCUGAUUUGCAUCGCGAGUGGGUGGAGAACAGGAUGCGAUCAAACCGGAACCGGUUGCAAGUGAGUGCAGAUAGUGUCUGGUUGCUAACGUGGCCU ....(((((.((.((((((...)))))).)))))))....((((((.(((.(((((....)))))(((......))).))).))))))(((..(....)..))). ( -34.60) >DroYak_CAF1 3140 105 - 1 AUAGUUUCAUCUGAUUUGCAUCGCAAGUGGGUGGAGAACAGGAUGCGAGCCAGCCGGAACCGGUUGCAAGUGAGUGCAGAUAGUGUCUGGUUGCUAACGUGGCCU ........((((((((..(.(((((.....((.....))....)))))((.(((((....)))))))..)..))).))))).......(((..(....)..))). ( -34.80) >consensus AUAGUUUCGUCUGAUUUGCAUCGCAAGUGGGUGGAGAACAGGAUGCGAGCAAACCGGAACCGGUUGCAAGUGAGUGCAGAUAGUGCCUGGCUGCUAACGUGGCCU ........((((((((..(.(((((.....((.....))....)))))((.(((((....)))))))..)..))).))))).......(((..(....)..))). (-32.60 = -32.60 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:36 2006