Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,883,748 – 2,883,846 |
Length | 98 |
Max. P | 0.600383 |
Location | 2,883,748 – 2,883,846 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 79.52 |
Mean single sequence MFE | -21.65 |
Consensus MFE | -11.98 |
Energy contribution | -13.72 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.17 |
Mean z-score | -2.04 |
Structure conservation index | 0.55 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.600383 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2883748 98 - 22407834 AGUAUGUGUAUUCGAAACUAAUGGGUGUAC-----UUGAUUGUAUAGAUAUAGAU-----AUAUAUACCAUCUACCUGUCAACUCCAUUACUGCUUAAUUAUAUAUAC .(((((((((........((((((((((((-----......)))))(((((((((-----.........)))))..))))...))))))).........))))))))) ( -19.13) >DroSim_CAF1 2531 100 - 1 AGUAUGUGUAUUCAAAACUAAUGGGUGUAC-----UUGAUUCUAUAUAUAUAGAU-GU--AUAUAUACCAUUUACCUGUCAACUCCAUUACUGCUUAAUUAUAUAUAC .(((((((((........((((((((..((-----..(((..(((((((((....-))--)))))))..))).....))..)).)))))).........))))))))) ( -18.53) >DroEre_CAF1 2547 108 - 1 AGUCUGUGUAUUCAAAGCUAAUGGAAGUACACCUAUAGAUUGUAUAUGUACAUAUAGUACAUAUAGAGGGUCGCCCUGUCAACUCCAUUACUCCCAAAUUAUAUAUAC .((.((((((.....((.(((((((.((..............(((((((((.....))))))))).((((...))))....))))))))))).......)))))).)) ( -23.00) >DroYak_CAF1 2583 103 - 1 AACCUGUGUGUUCAAAACUAAUGGGUGUAC-----UUGAUUGUACAUAUGUAUAAAGUACAUAGAGAGGGUCGCCCUGUCAACUCCAUUAAUGCUAAAUUAUAUAUAC ....(((((((.......((((((((((((-----((...(((((....))))))))))))).((.((((...)))).))....))))))..........))))))). ( -25.93) >consensus AGUAUGUGUAUUCAAAACUAAUGGGUGUAC_____UUGAUUGUAUAUAUAUAGAU_GU__AUAUAGACCAUCGACCUGUCAACUCCAUUACUGCUAAAUUAUAUAUAC .(((((((((........(((((((.((.........((((.(((((((...........))))))).)))).........))))))))).........))))))))) (-11.98 = -13.72 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:35 2006