Locus 996

Sequence ID 2L_DroMel_CAF1
Location 2,872,188 – 2,872,295
Length 107
Max. P 0.880390
window1594

overview

Window 4

Location 2,872,188 – 2,872,295
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 92.60
Mean single sequence MFE -28.92
Consensus MFE -27.66
Energy contribution -28.10
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.28
Structure conservation index 0.96
SVM decision value 0.91
SVM RNA-class probability 0.880390
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2872188 107 - 22407834
AUGAAAGUUGUGCUCUACGACGGGUUUUCUUCGACGCAGUUGGCCAGCAAACAAAGUGAAACAUCGAAAGAUGGAUAGAAAACUUGUUGCACAACAUUUGCGGCUCC
......(((((((.....((((((((((((((..(((..(((.........))).)))...((((....)))))).)))))))))))))))))))............ ( -32.90)
>DroSec_CAF1 7106 107 - 1
AUGAAAGUUGUGCUCUACGACGGGUUUUCUUCGUCGCAGUUGGCCAGCAAACAAAGUGAAACAUCGAAAGAUGGAUAGAAAACUUGUUGCACAACAUUGGCGGCUCC
......(((((((.....((((((((((((((.((((..(((.........))).))))..((((....)))))).)))))))))))))))))))............ ( -34.20)
>DroSim_CAF1 7499 107 - 1
AUGAAAGUUGUGCUCUACGACGGGUUUUCUUCGACGCAGUUGGCCAGCAAACAAAGUGAAACAUCGAAAGAUGGAUAGAAAACUUGUUGCACAACAUUGGCGGCUCC
......(((((((.....((((((((((((((..(((..(((.........))).)))...((((....)))))).)))))))))))))))))))............ ( -32.90)
>DroEre_CAF1 7362 104 - 1
AUGAAAGUUGUGGUCUACGACGGGUUUUCUUCGACGCAGUUGGCCAGCAAACAAAGUGAGACAUCGAAUGAUGGAAAGCAAACUUGUUGCAUAACAUUGCC---AUC
......(((((((((.((..((............))..)).)))).((((...((((..(.((((....)))).....)..)))).)))))))))......---... ( -21.80)
>DroYak_CAF1 7439 104 - 1
AUGAAAGUUGUGGUCUACGACGGGUUUUCUUCGACGCAGUUGGCCAGCAAACAAAGUGAAACAGCGAAAGAUGGAAAGCAAACUUGUUGCACAACAUUGCC---AAC
......(((((((((.((..((............))..)).)))).((((...((((....((.(....).))........)))).)))))))))......---... ( -22.80)
>consensus
AUGAAAGUUGUGCUCUACGACGGGUUUUCUUCGACGCAGUUGGCCAGCAAACAAAGUGAAACAUCGAAAGAUGGAUAGAAAACUUGUUGCACAACAUUGGCGGCUCC
......((((((.....(((((((((((((((..(((..(((.........))).)))...((((....)))))).)))))))))))))))))))............ (-27.66 = -28.10 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:32 2006