Locus 995

Sequence ID 2L_DroMel_CAF1
Location 2,869,166 – 2,869,278
Length 112
Max. P 0.573263
window1593

overview

Window 3

Location 2,869,166 – 2,869,278
Length 112
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 83.07
Mean single sequence MFE -32.97
Consensus MFE -25.31
Energy contribution -25.53
Covariance contribution 0.23
Combinations/Pair 1.19
Mean z-score -1.51
Structure conservation index 0.77
SVM decision value 0.08
SVM RNA-class probability 0.573263
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2869166 112 + 22407834
A-GGUUUAAGUGACGACGGCCGAUCGCUUGUCACGAUUCUUUCCACGUGUUAUGGAGCGUGCCUUGAAUGCAGCAGCAUUCACAAGGUGCUGCAAAAG-CAAC--AAAUAUAA-AUA
.-.((((..((((((((((....))).))))))).......((((.......))))(((..((((((((((....)))))))..)))..).))..)))-)...--........-... ( -32.30)
>DroGri_CAF1 15404 109 + 1
A-GGUUUAUGUGACGACGGCCGAGCGCUUGUCGCGAUUCUUGCCACGUGCCACGGAACGUGCCUUGAAAGCGGCGGCAUUCAUCAGAUGCUGCACAUGGAA-----AAG--AAUAUA
.-......((((((((((......)).))))))))((((((.(((.((((..........(((.(....).)))((((((.....)))))))))).)))..-----)))--)))... ( -33.30)
>DroSec_CAF1 4105 110 + 1
A-GGCUUAAGUGACGACGGCCGAUCGCUUGUCACGAUUCUUUCCACGUGUUAUGGAGCGUGCCUUGAAUGCAGCAGCAUUCACAAGGUGCUGCAAAAG-CAAC--AAAU--AA-AUA
.-.((((..((((((((((....))).))))))).......((((.......))))(((..((((((((((....)))))))..)))..).))..)))-)...--....--..-... ( -34.70)
>DroSim_CAF1 4216 110 + 1
A-GGCUUAGGUGACGACGGCCGAUCGCUUGUCACGAUUCUUUCCACGUGUUAUGGAGCGUGCCUUGAAUGCAGCAGCAUUCACAAGGUGCUGCAAAAG-CAAC--AAAU--AA-AUA
.-.((((..((((((((((....))).))))))).......((((.......))))(((..((((((((((....)))))))..)))..).))..)))-)...--....--..-... ( -34.50)
>DroWil_CAF1 7736 110 + 1
--GUUUUAAGUGACAACUGCCGAGCGUUUGUCACGGUUCUUGCCACGUGAAAUAGAACGUGCCUUGAAGGCGGCAGCAUUGACCAGAUGCUAAAAAAA-AAAA--AGACA-AA-AUC
--(((((..(((((((.(((...))).))))))).......(((((((........))))(((.....))))))((((((.....)))))).......-...)--)))).-..-... ( -32.50)
>DroYak_CAF1 4305 113 + 1
AGGGUUUAAGUGACGACGGCCGAUCGCUUGUCGCGAUUCUUUCCACGUGUUAUGGAGCGUGCCUUGAAUGCAGCAGCAUUCACAAGGUGCUAAAAGGG-CAAAUAAAAU--AA-AAA
...(((.....)))....(((((((((.....))))))..(((((.......))))).(..((((((((((....)))))))..)))..)......))-).........--..-... ( -30.50)
>consensus
A_GGUUUAAGUGACGACGGCCGAUCGCUUGUCACGAUUCUUUCCACGUGUUAUGGAGCGUGCCUUGAAUGCAGCAGCAUUCACAAGGUGCUGCAAAAG_CAAC__AAAU__AA_AUA
.........(((((((((......)).))))))).((((....(((((........)))))....))))...((((((((.....))))))))........................ (-25.31 = -25.53 +   0.23) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:31 2006