Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,867,719 – 2,867,826 |
Length | 107 |
Max. P | 0.846742 |
Location | 2,867,719 – 2,867,826 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 92.21 |
Mean single sequence MFE | -23.65 |
Consensus MFE | -21.43 |
Energy contribution | -21.49 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.17 |
Mean z-score | -1.43 |
Structure conservation index | 0.91 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846742 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2867719 107 + 22407834 ACUUACCUAGUUUAGCAUGCGUUUUGCACAGGUUUUGCUCAAUGCUCAAUUAUUAGUUUACACAUCACACGCGAGGUGGGUCCUAGCACCCGCCUUUCUAUCCUCAA ......(((((.......(((((..(((.......)))..)))))......)))))..............(.(((((((((......))))))))).)......... ( -23.92) >DroSec_CAF1 2655 107 + 1 ACUUACCUAGUUUAGUAUGCGUUUUGCACAGGUUUUGCUCAAUGCUCAAUUAUUAGUUUACACAUCACACGUGAGGUGGGUCCUAGCACUCGCCUCCCUAUCCUCAA ......(((((.......(((((..(((.......)))..)))))......)))))..............(.(((((((((......))))))))).)......... ( -22.62) >DroSim_CAF1 2748 107 + 1 ACUUACCUAGUUUAGCAUGCGUUUUGCACAGGUUUUGCUCAAUGCUCAAUUAUUAGUUUACACAUCACACGCGAGGUGGGUCCUAGCACCCGCCUCCCUAUCCUCAA ......(((((.......(((((..(((.......)))..)))))......)))))................(((((((((......)))))))))........... ( -25.72) >DroEre_CAF1 2683 107 + 1 ACUUACCUAGUUUAGCAUGCGUUUUGCACAGGUUUUGCUCAAUGCUCAAUUAUUAGUUUACACAUCACACGCGAGGUGGGUCCUAGCACCUGCCUCCCUAUCCUCAA ......(((((.......(((((..(((.......)))..)))))......)))))................((((..(((......)))..))))........... ( -22.92) >DroYak_CAF1 2767 107 + 1 ACUUACCUAGUUUAGCAUGCGUUUUGCACAGGUUUUGCUCAAUGCUCAAUUAUUAGUUUACACAUCACACGCGAGGUGGGUCCUAGCACCCGCCUCCCUAUCCUCAA ......(((((.......(((((..(((.......)))..)))))......)))))................(((((((((......)))))))))........... ( -25.72) >DroAna_CAF1 2910 102 + 1 ACUUA-CUAGUUUAGAAUGCGUUCAGCACACUAUUUGCUCAAUGCUCAAUUAUUAGUUUAUGCAUCACAAGUG-GGCCGGUCCUC-CACCCG--UUCCCAUCCUCAA ....(-(((((.......(((((.((((.......)))).)))))......)))))).............(((-((.(((.....-...)))--..)))))...... ( -21.02) >consensus ACUUACCUAGUUUAGCAUGCGUUUUGCACAGGUUUUGCUCAAUGCUCAAUUAUUAGUUUACACAUCACACGCGAGGUGGGUCCUAGCACCCGCCUCCCUAUCCUCAA ......(((((.......(((((..(((.......)))..)))))......)))))..............(.(((((((((......))))))))).)......... (-21.43 = -21.49 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:30 2006