Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,862,649 – 2,862,746 |
Length | 97 |
Max. P | 0.633290 |
Location | 2,862,649 – 2,862,746 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 77.38 |
Mean single sequence MFE | -13.68 |
Consensus MFE | -10.87 |
Energy contribution | -10.67 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.18 |
Mean z-score | -1.12 |
Structure conservation index | 0.79 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633290 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2862649 97 + 22407834 CUAGUGCUAUUUUUGUUACAAUACACUACAACAGAAGAUAGUGCUGCCCCAAAAAAAAAAAAAAAAGAAAGAUAUAAACGCAAAACUAUUGGAUAUG .(((..(((((((((((............))))).))))))..)))..((((....................................))))..... ( -11.52) >DroSec_CAF1 13126 85 + 1 CUGGUGCUAUUUUCGUUACAAUA-----AAACAGAAGAUAGUGCUGCCCCCAAAA-----AA--ACAAAAGAUAUAAACGCAAAACUAUUGGAUAUG ..((..(((((((((((......-----.))).))))))))..))....((((..-----..--........................))))..... ( -13.79) >DroSim_CAF1 12673 90 + 1 CUAGUGCUAUUUUCGUUACAAUA-----AAACAGAAGAUAGUGCUGCCCCAAAAAAAAAAAA--AUAAAAGAUAUAAACGCAAAACUAUUGGAUAUG .(((..(((((((((((......-----.))).))))))))..)))..((((..........--........................))))..... ( -14.28) >DroEre_CAF1 13458 74 + 1 CUAGUGCUAUUUUUGUUACAAUA-----C-AAAGCAGAUAGUGCUGCCCCGGAAAAUAU-----------------AAAGCAAAACUAUUGGAUAUG .(((..((((((((((......)-----)-)))...)))))..))).............-----------------..................... ( -11.20) >DroYak_CAF1 13878 92 + 1 CUAGUGCUAUUUUUGUUACAAUA-----CGAAAGAAGAUAGUGCUGACCCGGAAUAUAUGUAUAUAUAUAUACAUAAAAGCUAAACUAUUGGAUAUG .(((..((((((((.((......-----..)).))))))))..)))..((((....((((((((....))))))))..((.....)).))))..... ( -17.60) >consensus CUAGUGCUAUUUUUGUUACAAUA_____CAACAGAAGAUAGUGCUGCCCCAAAAAAAAA_AA__AAAAAAGAUAUAAACGCAAAACUAUUGGAUAUG .(((..((((((((...................))))))))..)))................................................... (-10.87 = -10.67 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:28 2006