Locus 991

Sequence ID 2L_DroMel_CAF1
Location 2,862,383 – 2,862,475
Length 92
Max. P 0.925768
window1589

overview

Window 9

Location 2,862,383 – 2,862,475
Length 92
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 62.24
Mean single sequence MFE -24.75
Consensus MFE -11.96
Energy contribution -12.78
Covariance contribution 0.81
Combinations/Pair 1.35
Mean z-score -1.82
Structure conservation index 0.48
SVM decision value 1.17
SVM RNA-class probability 0.925768
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2862383 92 - 22407834
AGUCUCCGGCUC-----UCCGGUUCUCUUUCACUCGCACUUUUGAGUGG----------------CUUCAUCGAGUGCUGUGCGUACUCGAAUUCUUUUUCUUUAUUAACCCA
((...((((...-----.))))..))...(((((((......)))))))----------------.....((((((((.....))))))))...................... ( -22.80)
>DroEre_CAF1 13150 99 - 1
UAUCUCUGGCUC-----UCCGGUGCUCUUCCACUCGCACUUUUGAGUGGGUAUCGCC-ACCGUCGGUUCUUCGAGUGCUG--CGUACUCGAAUUC------UUUAUUAACCCA
.......((.((-----..((((((...((((((((......))))))))....).)-))))..))...(((((((((..--.)))))))))...------.........)). ( -29.70)
>DroYak_CAF1 13588 100 - 1
UGUCUCCGACUC-----UCUGGUGCUCUUCCACUCGCACUUUUGAGUGAGUAUCGCCUACCGCGAGUUCUUCGAGUGCUG--CGUACUCGAAUUC------UUUAUUAACCCA
.......(((((-----...(((((((....(((((......))))))))))))((.....))))))).(((((((((..--.)))))))))...------............ ( -27.30)
>DroAna_CAF1 10375 85 - 1
UGUUUGCGUAUCAGAAGUGUGUCUCUCAGCCACUCUCUCCCCAGUGGGG----------------CUUAUU-GAG----GGGCCAGCACCAGUUC-------UUAUUAACUUA
............((((((((((((((((((((((........)))))..----------------....))-)))----))))..))))...)))-------).......... ( -19.20)
>consensus
UGUCUCCGGCUC_____UCCGGUGCUCUUCCACUCGCACUUUUGAGUGG________________CUUCUUCGAGUGCUG__CGUACUCGAAUUC______UUUAUUAACCCA
.....((((.........)))).......(((((((......)))))))....................(((((((((.....)))))))))..................... (-11.96 = -12.78 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:27 2006