Locus 990

Sequence ID 2L_DroMel_CAF1
Location 2,861,964 – 2,862,060
Length 96
Max. P 0.669885
window1588

overview

Window 8

Location 2,861,964 – 2,862,060
Length 96
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 78.62
Mean single sequence MFE -19.24
Consensus MFE -11.54
Energy contribution -11.02
Covariance contribution -0.52
Combinations/Pair 1.24
Mean z-score -1.79
Structure conservation index 0.60
SVM decision value 0.29
SVM RNA-class probability 0.669885
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2861964 96 + 22407834
----------------AUAUAUUUAACAUUUUAAUGUUGAGUAACAA----CAAUAACUUUCAGCACGCACAACUGAGUGUUUUGCACUUGAAGUUAAUGGAUAUUAAUCCAGCGA
----------------...((((((((((....))))))))))....----...............(((..(((((((((.....)))))..))))..(((((....)))))))). ( -22.50)
>DroSec_CAF1 12460 102 + 1
CAU----------AAUAUAUAUUUAACAUUUAAUUGUUGACUAACAA----CUAUAACUUCUAGCACGCGCAACUAAGUGUUUUGCACUUGAAGUUAAUAGCUAAUAACCCAGCGA
...----------.........((((((......)))))).......----...(((((((..((....))....(((((.....))))))))))))...(((........))).. ( -18.00)
>DroSim_CAF1 11982 102 + 1
CAU----------AUUAUAUAUUUAACAUUUAAUUGUUGACUAACAACUAACUAUAACUUCUAGCA----CAACUAAGUGUUUUGCACUUGAAGUUAAUAGCUAUUAACCCAGCGA
...----------.........((((((......))))))..............(((((((..(((----.(((.....))).)))....)))))))...(((........))).. ( -16.90)
>DroEre_CAF1 12748 101 + 1
CAC----------GCAAUGAAUUGAAAAUUUAAUUGUUGACUAACAA----CCAUAACU-CUAGCGCGCACAACUAAGUGCUUUGCACUUGAAGUUAAUAUUUAUUAACCCAGCGA
..(----------((....((((((....))))))((((.....)))----).......-...)))(((.....(((((((...)))))))..((((((....))))))...))). ( -19.10)
>DroYak_CAF1 13120 112 + 1
CACAAUAGACAAGACAAUGAGUUUAACAGUUUAUGGCUGACUAACAA----CCAUAACUUUUAGCAGGAACAACUAAGUGCUUUGCACUUGAAGUUAAUAGCUAUUAACCCAGCGA
.......................(((.((((.((((.((.....)).----)))))))).)))((.((......(((((((...)))))))..((((((....)))))))).)).. ( -19.70)
>consensus
CAC__________ACAAUAUAUUUAACAUUUAAUUGUUGACUAACAA____CCAUAACUUCUAGCACGCACAACUAAGUGUUUUGCACUUGAAGUUAAUAGCUAUUAACCCAGCGA
...................................((((...................................(((((((...)))))))..((((((....)))))).)))).. (-11.54 = -11.02 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:26 2006