Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,851,562 – 2,851,652 |
Length | 90 |
Max. P | 0.734944 |
Location | 2,851,562 – 2,851,652 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 82.15 |
Mean single sequence MFE | -26.45 |
Consensus MFE | -17.39 |
Energy contribution | -18.14 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.11 |
Mean z-score | -2.15 |
Structure conservation index | 0.66 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.734944 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2851562 90 + 22407834 ACACAUAGAAACACAAUGGCACACUGCCCCCGCAGCCCACUUUCCUUUUAGUUGGACUUGAGUCCAUGCUCCACUGAAUGGGCAGCGAAA .................(((.....)))..(((.(((((..(((.....((((((((....))))).))).....)))))))).)))... ( -25.70) >DroSec_CAF1 1828 90 + 1 ACACAUAGAAACACAAUGGCACACUGCCCCCGCAGCCCACUUUCCUUUCAGUUGGACUUGAGUCCAUGCUCCACUGAGUGGGCAGCGAAA .................(((.....)))..(((.((((((((.......((((((((....))))).))).....)))))))).)))... ( -30.60) >DroSim_CAF1 1843 90 + 1 ACACAUAGAAACACAAUGGCACACUGCCCCCGCAGCCCACUUUCCUUUCAGUUGAACUUGAGUCCAUGCUCCACUGAGUGGGCAGCGAAA .................(((.....)))..(((.((((((.......(((((.((.(.((....)).).)).))))))))))).)))... ( -24.91) >DroEre_CAF1 2056 90 + 1 AUAUAUAGAAAUACAAUGGCACACUGCCCCCGCUGCCCACUUUCCUUUCAGUUGGACUUGAGUCCAUGCUUCGCUGAGUGGCCAGCGAAA .................(((.....)))..(((((.((((((.......((((((((....))))).))).....)))))).)))))... ( -28.80) >DroYak_CAF1 2040 90 + 1 AUAUAUAGAAACACAAUGGCACACUGCCCCCGCAGCCCACUUUCCUUUCAGUUGGACUUGAGUCCAUGCUUCGCUGAGUGGCCAGCGAAA .................(((.....)))..(((.(.((((((.......((((((((....))))).))).....)))))).).)))... ( -23.50) >DroAna_CAF1 1348 80 + 1 GUCUGUCCGUAUACACUGG-----UGCCCCCACGACCCACUCUAGUU-----UGGUCAGGGGUCCACGCUUCGGUGAGCGUCAAGUGAAA .............((((((-----.(((((...((((.((....)).-----.)))).)))))))((((((....))))))..))))... ( -25.20) >consensus ACACAUAGAAACACAAUGGCACACUGCCCCCGCAGCCCACUUUCCUUUCAGUUGGACUUGAGUCCAUGCUCCACUGAGUGGCCAGCGAAA .................(((.....)))..(((.(.((((((..........(((((....))))).........)))))).).)))... (-17.39 = -18.14 + 0.75)
Location | 2,851,562 – 2,851,652 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 82.15 |
Mean single sequence MFE | -30.17 |
Consensus MFE | -19.89 |
Energy contribution | -20.20 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.19 |
Mean z-score | -1.55 |
Structure conservation index | 0.66 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526759 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2851562 90 - 22407834 UUUCGCUGCCCAUUCAGUGGAGCAUGGACUCAAGUCCAACUAAAAGGAAAGUGGGCUGCGGGGGCAGUGUGCCAUUGUGUUUCUAUGUGU (..(((.((((((((..(..((..(((((....))))).))..)..))..)))))).)))..)((((((...))))))............ ( -29.70) >DroSec_CAF1 1828 90 - 1 UUUCGCUGCCCACUCAGUGGAGCAUGGACUCAAGUCCAACUGAAAGGAAAGUGGGCUGCGGGGGCAGUGUGCCAUUGUGUUUCUAUGUGU (..(((.(((((((..........(((((....))))).((....))..))))))).)))..)((((((...))))))............ ( -32.10) >DroSim_CAF1 1843 90 - 1 UUUCGCUGCCCACUCAGUGGAGCAUGGACUCAAGUUCAACUGAAAGGAAAGUGGGCUGCGGGGGCAGUGUGCCAUUGUGUUUCUAUGUGU (..(((.(((((((((((.((((.((....)).)))).))))).......)))))).)))..)((((((...))))))............ ( -31.81) >DroEre_CAF1 2056 90 - 1 UUUCGCUGGCCACUCAGCGAAGCAUGGACUCAAGUCCAACUGAAAGGAAAGUGGGCAGCGGGGGCAGUGUGCCAUUGUAUUUCUAUAUAU (..(((((.(((((..........(((((....))))).((....))..))))).)))))..)((((((...))))))............ ( -32.10) >DroYak_CAF1 2040 90 - 1 UUUCGCUGGCCACUCAGCGAAGCAUGGACUCAAGUCCAACUGAAAGGAAAGUGGGCUGCGGGGGCAGUGUGCCAUUGUGUUUCUAUAUAU ....(((((....)))))((((((..(.(((.((((((.((....))....))))))..)))(((.....))).)..))))))....... ( -30.70) >DroAna_CAF1 1348 80 - 1 UUUCACUUGACGCUCACCGAAGCGUGGACCCCUGACCA-----AACUAGAGUGGGUCGUGGGGGCA-----CCAGUGUAUACGGACAGAC ...((((..(((((......)))))((.(((((((((.-----.((....)).))))).))))...-----))))))............. ( -24.60) >consensus UUUCGCUGCCCACUCAGCGAAGCAUGGACUCAAGUCCAACUGAAAGGAAAGUGGGCUGCGGGGGCAGUGUGCCAUUGUGUUUCUAUAUAU (..(((.(.(((((..........(((((....)))))...........))))).).)))..)((((((...))))))............ (-19.89 = -20.20 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:23 2006