Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,847,698 – 2,847,789 |
Length | 91 |
Max. P | 0.948752 |
Location | 2,847,698 – 2,847,789 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.62 |
Mean single sequence MFE | -28.74 |
Consensus MFE | -17.00 |
Energy contribution | -17.83 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.21 |
Mean z-score | -2.12 |
Structure conservation index | 0.59 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948752 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2847698 91 + 22407834 -----------------------------CGUCGCCAUCAACAGCUCGUCCAGUACUUUUCCUGCUCCUGGGCAUCGGAAUUGGCUAUCUGAUCACCAAGGUUCUUGUAUGGCCAAUUAU -----------------------------....((((((((.((((.((((((..............))))))((((((........))))))......)))).))).)))))....... ( -23.04) >DroSec_CAF1 838 91 + 1 -----------------------------CGUCGCCAUCAUCCACUCGCCCAGUGCUCUUCCUGCUCCUGGGCAUUGGAAUUGGCUAUCUGAUCACCCAGGUUCUUGUGUGGCCAAUAAU -----------------------------....((((...((((...((((((.((.......))..))))))..))))..))))....((..(((.(((....))).)))..))..... ( -30.20) >DroSim_CAF1 59 91 + 1 -----------------------------CGUCGCCAUCAUCCACUCGCCCAGUGCUCUUCCUGCUCCUGGGCAUUGGAAUUGGCUAUCUGAUCACCCAGGUUCUUGUGUGGCCAAUAAU -----------------------------....((((...((((...((((((.((.......))..))))))..))))..))))....((..(((.(((....))).)))..))..... ( -30.20) >DroEre_CAF1 743 91 + 1 -----------------------------CGUCGCCUUCAUCAUCUCGCCCAGUGCUUUUCCUGCUCCUGGGCAUCGGGAUUGGCUAUCUUAUCACCCAGGUUCUUCUGCGGCCUAUAAU -----------------------------.(((((.......((((.((((((.((.......))..))))))...(((..(((........))))))))))......)))))....... ( -24.62) >DroYak_CAF1 59 91 + 1 -----------------------------CGACGCCAUCAACCGCUCGUCCAGUGCUUUUCCUGCUCCUGGGCAUUGGGAUUGGCUAUCUAAUCACCCAGGUGCUUGUGUGGCCCAUAAU -----------------------------....((((((((.((((.((((((.((.......))..))))))...((((((((....)))))).))..)))).))).)))))....... ( -29.50) >DroAna_CAF1 3918 120 + 1 GCGAAACAGUCAUCUCCAUCCUCAGCACUUAUCGGGGUCAUCGUCCCGUCCUGUGCUGUUCCUGCUCAUGGGCAUUGGAAUUGGUUACAUAAUCACCCAGGUUGUUCUAUUGCCCAUCAU ((((.....))...........((((((....(((((......)))))....)))))).....))..(((((((.(((((((((............)))....)))))).)))))))... ( -34.90) >consensus _____________________________CGUCGCCAUCAUCCACUCGCCCAGUGCUUUUCCUGCUCCUGGGCAUUGGAAUUGGCUAUCUGAUCACCCAGGUUCUUGUGUGGCCAAUAAU ...............................................((((((.((.......))..)))))).........((((((.(((..((....))..))).))))))...... (-17.00 = -17.83 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:22 2006