Locus 986

Sequence ID 2L_DroMel_CAF1
Location 2,844,568 – 2,844,665
Length 97
Max. P 0.663107
window1582

overview

Window 2

Location 2,844,568 – 2,844,665
Length 97
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 74.73
Mean single sequence MFE -22.17
Consensus MFE -3.64
Energy contribution -3.84
Covariance contribution 0.20
Combinations/Pair 1.14
Mean z-score -1.58
Structure conservation index 0.16
SVM decision value 0.27
SVM RNA-class probability 0.663107
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2844568 97 + 22407834
AAAGUACGAU----------------UAAAAUCCAAUUAAGAAGGUAUG------AAAGUGGUCUUUGUAUUUUAGUCAUAGG-AUAUAUUAUAUAUGGGAAAUGUCUUGUAUGGCUUAU
.((((..(((----------------((((((.(((...(((...(((.------...))).)))))).)))))))))(((((-((((.((........)).)))))))))...)))).. ( -18.40)
>DroSec_CAF1 27931 96 + 1
AAAGUAGGAU----------------UGAAAUCCAAUUAGGAAGAUAUG------AAAGUGGUCUUU-UAUUUCAGUCAAAGG-AUAUAUCAUAUAUGGGAAAUGUCUUGUACGGCUUAU
.((((.((((----------------((((((((.....))).....((------((((....))))-))))))))))..(((-((((.((........)).)))))))...).)))).. ( -20.60)
>DroSim_CAF1 30498 96 + 1
AAAGUAGGAU----------------UGAAAUUCAAUUAGGAAGAUAUG------AAAGUGGUCUUU-UAUUUUAGUCAAAGG-AUAUAUCAUAUAUGGGAAAUGUCUUGUACGGCUUAU
.((((.((((----------------((((((.......(((((((((.------...)).))))))-))))))))))..(((-((((.((........)).)))))))...).)))).. ( -17.81)
>DroEre_CAF1 28742 106 + 1
AAAGCAGCAA-ACACACUGGUCUUUCUAAGACCCAAUCAAGAAGAUAUG-----AAAAGGGGUCUUU-UAUUUCAGUCAUACGUGUAU-------AUCGGAAAAGUCUUGUACGGCUUAU
.((((.....-....(((((.......(((((((..(((........))-----)....))))))).-....)))))......(((((-------(..(((....))))))))))))).. ( -22.10)
>DroYak_CAF1 29085 118 + 1
AAAGCAGGAUAGGACUCUGAUCUUUUCAAGAUCCAAUGAAGAAGAAAUCUCCCACAAAGUGGUCAUA-UAUUUUAGUCAUAGG-AUAUAUCAUAGAUGGGAAAUGUCUUGUACGGCUUAU
.((((...((((((((((.((((.......((((.((((..((((......((((...)))).....-..))))..)))).))-)).......)))).)))...)))))))...)))).. ( -31.96)
>consensus
AAAGUAGGAU________________UAAAAUCCAAUUAAGAAGAUAUG______AAAGUGGUCUUU_UAUUUUAGUCAUAGG_AUAUAUCAUAUAUGGGAAAUGUCUUGUACGGCUUAU
.((((...................................((((((...............))))))............................(..(((....)))..)...)))).. ( -3.64 =  -3.84 +   0.20) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:21 2006