Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,844,568 – 2,844,665 |
Length | 97 |
Max. P | 0.663107 |
Location | 2,844,568 – 2,844,665 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.73 |
Mean single sequence MFE | -22.17 |
Consensus MFE | -3.64 |
Energy contribution | -3.84 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.14 |
Mean z-score | -1.58 |
Structure conservation index | 0.16 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663107 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2844568 97 + 22407834 AAAGUACGAU----------------UAAAAUCCAAUUAAGAAGGUAUG------AAAGUGGUCUUUGUAUUUUAGUCAUAGG-AUAUAUUAUAUAUGGGAAAUGUCUUGUAUGGCUUAU .((((..(((----------------((((((.(((...(((...(((.------...))).)))))).)))))))))(((((-((((.((........)).)))))))))...)))).. ( -18.40) >DroSec_CAF1 27931 96 + 1 AAAGUAGGAU----------------UGAAAUCCAAUUAGGAAGAUAUG------AAAGUGGUCUUU-UAUUUCAGUCAAAGG-AUAUAUCAUAUAUGGGAAAUGUCUUGUACGGCUUAU .((((.((((----------------((((((((.....))).....((------((((....))))-))))))))))..(((-((((.((........)).)))))))...).)))).. ( -20.60) >DroSim_CAF1 30498 96 + 1 AAAGUAGGAU----------------UGAAAUUCAAUUAGGAAGAUAUG------AAAGUGGUCUUU-UAUUUUAGUCAAAGG-AUAUAUCAUAUAUGGGAAAUGUCUUGUACGGCUUAU .((((.((((----------------((((((.......(((((((((.------...)).))))))-))))))))))..(((-((((.((........)).)))))))...).)))).. ( -17.81) >DroEre_CAF1 28742 106 + 1 AAAGCAGCAA-ACACACUGGUCUUUCUAAGACCCAAUCAAGAAGAUAUG-----AAAAGGGGUCUUU-UAUUUCAGUCAUACGUGUAU-------AUCGGAAAAGUCUUGUACGGCUUAU .((((.....-....(((((.......(((((((..(((........))-----)....))))))).-....)))))......(((((-------(..(((....))))))))))))).. ( -22.10) >DroYak_CAF1 29085 118 + 1 AAAGCAGGAUAGGACUCUGAUCUUUUCAAGAUCCAAUGAAGAAGAAAUCUCCCACAAAGUGGUCAUA-UAUUUUAGUCAUAGG-AUAUAUCAUAGAUGGGAAAUGUCUUGUACGGCUUAU .((((...((((((((((.((((.......((((.((((..((((......((((...)))).....-..))))..)))).))-)).......)))).)))...)))))))...)))).. ( -31.96) >consensus AAAGUAGGAU________________UAAAAUCCAAUUAAGAAGAUAUG______AAAGUGGUCUUU_UAUUUUAGUCAUAGG_AUAUAUCAUAUAUGGGAAAUGUCUUGUACGGCUUAU .((((...................................((((((...............))))))............................(..(((....)))..)...)))).. ( -3.64 = -3.84 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:21 2006