Locus 985

Sequence ID 2L_DroMel_CAF1
Location 2,833,987 – 2,834,080
Length 93
Max. P 0.848768
window1581

overview

Window 1

Location 2,833,987 – 2,834,080
Length 93
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 77.31
Mean single sequence MFE -28.46
Consensus MFE -12.16
Energy contribution -12.96
Covariance contribution 0.80
Combinations/Pair 1.33
Mean z-score -2.11
Structure conservation index 0.43
SVM decision value 0.78
SVM RNA-class probability 0.848768
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2833987 93 + 22407834
ACUUUGGCUUCGCAACAGCACA--------GCACAUAGAUACAUACAUA----UGUAGUUCAUGUGUGUUCGUUGGCAGGUGAAGUGAAGCAGGUGAGGCGGCGG
.((.(.(((((((.....(((.--------.(((...(((..(((((((----((.....)))))))))..))).....)))..)))......))))))).).)) ( -27.90)
>DroSec_CAF1 17348 89 + 1
ACUUUGGCUUCGCAACAGCACA-----UAGAUACAUACAUGCAUGCAUA----UGUAGUUCAUGUGUG----UUGGCAGGUAAAGUGAAGCAGGUGAGGC---GG
......(((((((..(((((((-----((...((.((((((......))----))))))...))))))----)))((............))..)))))))---.. ( -28.20)
>DroSim_CAF1 19477 93 + 1
ACUUUGGCUUCGCAACAGCACA-----UAGAUACAUACAUUCAAACAUAUGUAUGUAGUUCAUGUGUG----UUGGCAGGUGAAGUGAAGCAGGUGAGGC---GG
...((.(((((((..(((((((-----((..(((((((((........))))))))).....))))))----)))....))))))).))((.......))---.. ( -33.30)
>DroEre_CAF1 18250 84 + 1
ACUCUGGCUUCGCAACAGCUCAGCCCGUAGAUACUUACGUA------UA----UGUAGUUCAUGUUUG----UUGGC----CAACUGAAGCAGGUGAGGC---GG
......(((((((....((((((((..((((((.(((((..------..----)))))....))))))----..)))----....)).)))..)))))))---.. ( -21.10)
>DroYak_CAF1 18234 90 + 1
ACUUUGGCUUCGCAACAGCAUAGCACAUAGAUACGUAUGUACGUAUGUA----UGUAGUUCAUGUUUG----UUGGC----UAACUGAAGCAGGUGAGGC---GG
......(((((((((((((((((((((((.((((((....)))))).))----))).))).))).)))----)).((----(......)))..)))))))---.. ( -31.80)
>consensus
ACUUUGGCUUCGCAACAGCACA_____UAGAUACAUACAUACAUACAUA____UGUAGUUCAUGUGUG____UUGGCAGGUGAAGUGAAGCAGGUGAGGC___GG
.(((..(((((((....))..............(((((((...((((......))))....)))))))..................)))))....)))....... (-12.16 = -12.96 +   0.80) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:20 2006