Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,833,987 – 2,834,080 |
Length | 93 |
Max. P | 0.848768 |
Location | 2,833,987 – 2,834,080 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 77.31 |
Mean single sequence MFE | -28.46 |
Consensus MFE | -12.16 |
Energy contribution | -12.96 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.33 |
Mean z-score | -2.11 |
Structure conservation index | 0.43 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.848768 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2833987 93 + 22407834 ACUUUGGCUUCGCAACAGCACA--------GCACAUAGAUACAUACAUA----UGUAGUUCAUGUGUGUUCGUUGGCAGGUGAAGUGAAGCAGGUGAGGCGGCGG .((.(.(((((((.....(((.--------.(((...(((..(((((((----((.....)))))))))..))).....)))..)))......))))))).).)) ( -27.90) >DroSec_CAF1 17348 89 + 1 ACUUUGGCUUCGCAACAGCACA-----UAGAUACAUACAUGCAUGCAUA----UGUAGUUCAUGUGUG----UUGGCAGGUAAAGUGAAGCAGGUGAGGC---GG ......(((((((..(((((((-----((...((.((((((......))----))))))...))))))----)))((............))..)))))))---.. ( -28.20) >DroSim_CAF1 19477 93 + 1 ACUUUGGCUUCGCAACAGCACA-----UAGAUACAUACAUUCAAACAUAUGUAUGUAGUUCAUGUGUG----UUGGCAGGUGAAGUGAAGCAGGUGAGGC---GG ...((.(((((((..(((((((-----((..(((((((((........))))))))).....))))))----)))....))))))).))((.......))---.. ( -33.30) >DroEre_CAF1 18250 84 + 1 ACUCUGGCUUCGCAACAGCUCAGCCCGUAGAUACUUACGUA------UA----UGUAGUUCAUGUUUG----UUGGC----CAACUGAAGCAGGUGAGGC---GG ......(((((((....((((((((..((((((.(((((..------..----)))))....))))))----..)))----....)).)))..)))))))---.. ( -21.10) >DroYak_CAF1 18234 90 + 1 ACUUUGGCUUCGCAACAGCAUAGCACAUAGAUACGUAUGUACGUAUGUA----UGUAGUUCAUGUUUG----UUGGC----UAACUGAAGCAGGUGAGGC---GG ......(((((((((((((((((((((((.((((((....)))))).))----))).))).))).)))----)).((----(......)))..)))))))---.. ( -31.80) >consensus ACUUUGGCUUCGCAACAGCACA_____UAGAUACAUACAUACAUACAUA____UGUAGUUCAUGUGUG____UUGGCAGGUGAAGUGAAGCAGGUGAGGC___GG .(((..(((((((....))..............(((((((...((((......))))....)))))))..................)))))....)))....... (-12.16 = -12.96 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:20 2006