Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,825,305 – 2,825,425 |
Length | 120 |
Max. P | 0.500000 |
Location | 2,825,305 – 2,825,425 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.42 |
Mean single sequence MFE | -29.88 |
Consensus MFE | -26.76 |
Energy contribution | -26.56 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.06 |
Mean z-score | -1.11 |
Structure conservation index | 0.90 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2825305 120 - 22407834 UUUCUGAUCGGAAUAAAACGAUUAGUAUACGCGAAGUGCCCCAGAUCUACAUCAAUGAGGAAGAUGAACUCUUUGUCAACACCACGGGAUGUCGAAUAAGUGCGACGAAACCACUUUCGC ...(((((((........))))))).....((((((((.(((.(((....)))..(((.(((((.....))))).))).......))).(((((........)))))....))).))))) ( -32.80) >DroSec_CAF1 8992 120 - 1 UUUCUGAUCGGAAUAAAACGAUUGAUAUAAGCGAAGUGCCCCAGAUCUACAUCAAUGAGGAAGAUGAACUCUUUGUCAACACCACGGGAUGUCGAAUAAGUGCGACGAAGCCACUUUCGC .....(((((........))))).......((((((((.(((.(((....)))..(((.(((((.....))))).))).......))).(((((........)))))....))).))))) ( -29.30) >DroSim_CAF1 11191 120 - 1 UUUCUGAUCGGAAUAAAACGAUUGACAUAAGCGAAGUGCCCCAGAUCUACAUCAAUGAGGAAGAUGAACUCUUUGUCAACACCACGGGAUGUCGAAUAAGUGCGACGAAACCACUUUCGC .....(((((........))))).......((((((((.(((.(((....)))..(((.(((((.....))))).))).......))).(((((........)))))....))).))))) ( -29.30) >DroEre_CAF1 8870 120 - 1 UUUCCGAUCGGAAUAAAGCCAUAAGCAUAAGCGAAGUGCCCCAGAUCUACAUCAAUGAGGAAGAUGAGCUCUUUGUCAACACCACGGGAUGUCGAAUAAGUUCGACGAAACCACUUUCGC .((((....))))....((.....))....((((((((.(((.(((....)))..(((.(((((.....))))).))).......))).(((((((....)))))))....))).))))) ( -31.50) >DroYak_CAF1 8920 120 - 1 UUUCCGCUCGGAAAAAAGCCAUUAGUAUAAGCGAAGUGCCCCAGAUCUACAUCAAUGAGGAAGAUGAUCUCUUUGUCAACACCACGGGAUGUCGAAUAAGUUCAACAAAGCCACUUUCGC (((((....)))))................((((((((.(((.(((....)))..(((.(((((.....))))).))).......))).(((.(((....))).)))....))).))))) ( -26.50) >consensus UUUCUGAUCGGAAUAAAACGAUUAGUAUAAGCGAAGUGCCCCAGAUCUACAUCAAUGAGGAAGAUGAACUCUUUGUCAACACCACGGGAUGUCGAAUAAGUGCGACGAAACCACUUUCGC .((((....)))).................((((((((.(((.(((....)))..(((.(((((.....))))).))).......))).(((((........)))))....))).))))) (-26.76 = -26.56 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:19 2006