Locus 983

Sequence ID 2L_DroMel_CAF1
Location 2,825,105 – 2,825,225
Length 120
Max. P 0.879415
window1579

overview

Window 9

Location 2,825,105 – 2,825,225
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.67
Mean single sequence MFE -33.50
Consensus MFE -27.90
Energy contribution -27.74
Covariance contribution -0.16
Combinations/Pair 1.10
Mean z-score -1.64
Structure conservation index 0.83
SVM decision value 0.91
SVM RNA-class probability 0.879415
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2825105 120 + 22407834
CAAGGAUAUGUACUUGUUGUGUGCGUCAUCGACCCUCACAAAUUCCCGAUAAAUGCAGGAGACUUGCCUCCAGGAGAGAAUCCCAUGCCGCGAUAUGUUACGCACCAAGUAAUUCCUGUC
..((((....((((((.(((((((((.((((..........................((((......)))).(((.....))).......))))))).)))))).))))))..))))... ( -32.00)
>DroSec_CAF1 8792 120 + 1
CAGGGAUAUGUACUUGUUGUGUGCGUCAUCGACCCUCACAAACUCCCGAUAAAUGCAGGAGACUUGUCUCCAUGAGAGAAUCCCAUGCCUCGAUAUGUUGCGCACCAAGUAAUUCCUGUC
(((((((...((((((..(((((((..(((((.........................(((((....)))))(((.(.....).)))...)))))....)))))))))))))))))))).. ( -34.60)
>DroSim_CAF1 10991 120 + 1
CAGGGAUAUGUACUUGUUGUGUGCGUCAUCGACCCUCACAAACUCCCGAUAAAUGCAGGAGACUUGCCUCCAUGAGAGAAUCCCAUGCCUCGAUAUGUUGCGCACCAAGUAAUUCCUGUC
(((((((...((((((..(((((((..(((((..........((((.(.......).)))).........((((.(.....).))))..)))))....)))))))))))))))))))).. ( -33.30)
>DroEre_CAF1 8670 120 + 1
CAAGGAUAUAUACUUGUUGUGUGCGUCAUCGACCCUCAAAAACUGCCGAUAAAUGCAGGACACUUGCCUCCAUGAGAGAAUCCCAGGCCUCGAUAUGUUACGCACCAAGUAAUUCCUGUC
..((((....((((((.(((((((((.(((((..........((((........)))).......((((....((.....))..)))).)))))))).)))))).))))))..))))... ( -32.50)
>DroYak_CAF1 8720 120 + 1
CAAGGAUAUAUACUUGUUGUGUGCGUCAUCGACUCUCACAAACUGCCUAUAAACGCAGGAGACUUGCCUCCACGAGAGCAUUCUAAGCUUCGAUAUGUUUCGCACCAAGUAAUUCCUGUC
..((((....((((((.((((.((((.((((((((((......(((........)))((((......))))..)))))...........)))))))))..)))).))))))..))))... ( -35.10)
>consensus
CAAGGAUAUGUACUUGUUGUGUGCGUCAUCGACCCUCACAAACUCCCGAUAAAUGCAGGAGACUUGCCUCCAUGAGAGAAUCCCAUGCCUCGAUAUGUUACGCACCAAGUAAUUCCUGUC
..((((....((((((.(((((((((.(((((......................((((....).)))(((.....)))...........)))))))).)))))).))))))..))))... (-27.90 = -27.74 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:18 2006