Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,824,945 – 2,825,065 |
Length | 120 |
Max. P | 0.639545 |
Location | 2,824,945 – 2,825,065 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.92 |
Mean single sequence MFE | -37.08 |
Consensus MFE | -30.09 |
Energy contribution | -29.97 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.13 |
Mean z-score | -1.44 |
Structure conservation index | 0.81 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639545 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2824945 120 - 22407834 UGGGUACUGGUCUGCAACAUAUUCGCACUUGGUGCUGGGUAGACUUUGGCAGGAUCAUAUUCCACGACGUUAUGUACUUCCUGCCACCACUGCCUCAGGCUACGAACAGAUCAACAGAAC .......(((((((.......((((....((((.((((((((....((((((((.((((...........))))....))))))))...))))).))))))))))))))))))....... ( -36.11) >DroSec_CAF1 8632 120 - 1 UGGGUACUGGUCUGCAACACAUUCGUACUUGGUGCUGGGUGGACUUUGGCAGGAUCAUAUUCCACGACGUUCUGUACUUCCUGCCACCACUGCCCCAGGCUACGAACAGAUCAACAGAAC .......(((((((.......(((((((((((.((..(((((....((((((((...(((.............)))..))))))))))))))).))))).)))))))))))))....... ( -40.23) >DroSim_CAF1 10831 120 - 1 UAGGUACUGGUCUGCAACACAUUCGUACUUGGUGCUGGGUGGACUUUGGCAGGAUCAUAUUCCACGACGUUCUGUACUUCCUGCCACCACUGCCCCAGGCUACGAACAGAUCAACAGAAC .......(((((((.......(((((((((((.((..(((((....((((((((...(((.............)))..))))))))))))))).))))).)))))))))))))....... ( -40.23) >DroEre_CAF1 8510 120 - 1 UGGGCACUGGCUUGCAAAACAUUCGAACUUGGUGCUGGGUGGACUUUGGCAGGAUCAUUUUCCACGACGUUCUCUAUUUCCUGCCACCACCGCCCCAGGCUACAAACAGAUCUACAGAAC ..(((.(((....(((...((........)).))).((((((....((((((((........................))))))))...))))))))))))................... ( -33.46) >DroYak_CAF1 8560 120 - 1 UUGGCACUGGUCUGCAAUACAUUCGCACUUGGUGCUGGGUGGACUUUGGCAGGAUUAUUUUCCACGACGUUCUCUUUUUCCUGCCACCGCCGCCACCGACUACGAACAGAUCUACAGAAC ........((((((.......((((...((((((...(((((....((((((((........................)))))))))))))..))))))...))))))))))........ ( -35.37) >consensus UGGGUACUGGUCUGCAACACAUUCGCACUUGGUGCUGGGUGGACUUUGGCAGGAUCAUAUUCCACGACGUUCUGUACUUCCUGCCACCACUGCCCCAGGCUACGAACAGAUCAACAGAAC ........((((((.......((((....((((.((((((((....((((((((........................))))))))...))))).)))))))))))))))))........ (-30.09 = -29.97 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:17 2006