Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,824,545 – 2,824,665 |
Length | 120 |
Max. P | 0.966305 |
Location | 2,824,545 – 2,824,665 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.08 |
Mean single sequence MFE | -39.75 |
Consensus MFE | -31.64 |
Energy contribution | -33.48 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.12 |
Mean z-score | -2.25 |
Structure conservation index | 0.80 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.966305 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2824545 120 + 22407834 AGCGAAUGAGAUUCAAUCUCAGUCAUCAGAGGUCGCAUGUAAAUAUCGGUGGGCUGCUUCUGAAAGCCCCUCUUUCUGUAGAUAAACAGCCCAGCGGUAUCCGUGUCCUCUGCAAAGAUG .((((.((((((...)))))).))...(((((..(((((...((((((.(((((((..((((((((.....)))))...)))....))))))).)))))).))))))))))))....... ( -44.10) >DroSec_CAF1 8232 120 + 1 AACGAAUGAGAUUCGAUUUCAGUCAUCAGAGGUCGCAUGUAAAUAUCGGUGGGCUGCUUCUGGAAUCCUCUCUUUCUGUAAAUAAACAGCCCGGCGGUAUCCGUGUCCUCUGCAAAGAUG ...((.((((((...)))))).))..((((((..(((((...((((((.(((((((.....((((........)))).........))))))).)))))).)))))))))))........ ( -36.84) >DroSim_CAF1 10431 120 + 1 AUCGAAUGAGAUUCGAUUUCAGUCAUCAGAGGUCGCAUGUAAAUAUCGGUGGGCUGCUUCUGGAAGCCCCUCUUUCUGUAGAUAAACAGCCCGGCGGUAUCCGUGUCCUCUGCAAAGAUG (((((.((((((...)))))).))..((((((..(((((...((((((.(((((((..((((((((......)))))..)))....))))))).)))))).)))))))))))....))). ( -41.00) >DroEre_CAF1 8110 120 + 1 AACGAAUGAGAUUCGAUCUCAACCAUCAGAGGACGCAUGUAAAUAUCGGUGGGCUGCUUCUUGUAGCCCCUCUUUCUGUAGAUAAAAAGCCCUGCGGUAUCCGUGUCCUCUGCAAAGAUG ......((((((...)))))).....((((((((((...........((.(((((((.....))))))).))...((((((..........)))))).....))))))))))........ ( -41.60) >DroYak_CAF1 8160 120 + 1 AACGAAUGAGCUUCGAUCUCAGUCAUCAGCGGACGCAUGUAAAUAUCGGUGGGCUCCUUCUUGUAGCCCCUUUUUCUGUAGGUAAACAGCCCUGCGGUAUCCGUGUCCUCUGCAAAAAUG ...((.((((.......)))).))..(((.((((((...........((.(((((.(.....).)))))))....(((((((........))))))).....)))))).)))........ ( -35.20) >consensus AACGAAUGAGAUUCGAUCUCAGUCAUCAGAGGUCGCAUGUAAAUAUCGGUGGGCUGCUUCUGGAAGCCCCUCUUUCUGUAGAUAAACAGCCCGGCGGUAUCCGUGUCCUCUGCAAAGAUG ...((.((((((...)))))).))..((((((..(((((...((((((.(((((((..((((((((.....)))))...)))....))))))).)))))).)))))))))))........ (-31.64 = -33.48 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:16 2006