Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,823,628 – 2,823,728 |
Length | 100 |
Max. P | 0.701625 |
Location | 2,823,628 – 2,823,728 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 91.20 |
Mean single sequence MFE | -28.36 |
Consensus MFE | -21.84 |
Energy contribution | -22.88 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.70 |
Structure conservation index | 0.77 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.701625 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2823628 100 + 22407834 GAUAGUUUUGAACGCAGUACGCCUGAUGGGCGUAUCUGUCUGUCCUGGUCACAGGACCUCCCAGCUUCAUAUCCGUCUUUUCGCCAUUAAGCAUUGUUAU ((..(...(((((((((((((((.....)))))).))))..((((((....))))))......).))))...)..)).....((......))........ ( -28.40) >DroSec_CAF1 7315 100 + 1 GAUAGUUUUGAACGCAGUACGCCUGAUCGGCGUAUCUGUCUGUCCUGGUCACAGGACCUCCCAGCUUCAUAUCCGUCUUUUCCCCAUUGAACAUGGUUAU ((..(...(((((((((((((((.....)))))).))))..((((((....))))))......).))))...)..))......((((.....)))).... ( -28.90) >DroSim_CAF1 9514 100 + 1 GAUAGUUUUGAACGCAGUACGCCUGAUCGGCGUAUCUGUCUGUCCUGGUCACAGGACCUCCCAGCUUCAUAUCCGUCUUUUCCCCAUUGAACAUGGUUAU ((..(...(((((((((((((((.....)))))).))))..((((((....))))))......).))))...)..))......((((.....)))).... ( -28.90) >DroEre_CAF1 7196 100 + 1 GAUAGUUUUGAACGCAGUAGGCCUGCUGGGCGUAUCUAUCGGUCCUGGUCACAGGACCUCCCAGCUGCAUAUCCUUCCUCUCACCAUUAAGCAUGGUUAU (((((...((..(((((.....)))).)..))...)))))(((((((....)))))))..((((((.......................))).))).... ( -30.00) >DroYak_CAF1 7246 100 + 1 GAUAGUUUUGAACGCAGAAGGCCUGAUGGGCGUAUCUAUCUGUCCUGGUCACAGGACCACCCAGCUGCAUAUCCUUUCUCUCACCAUUUAACAUGGUUAU ((((((.....))((((..((...((((((....)))))).((((((....))))))...))..)))).)))).........(((((.....)))))... ( -25.60) >consensus GAUAGUUUUGAACGCAGUACGCCUGAUGGGCGUAUCUGUCUGUCCUGGUCACAGGACCUCCCAGCUUCAUAUCCGUCUUUUCACCAUUAAACAUGGUUAU ((..(...((((.((.(((((((.....)))))))......((((((....))))))......))))))...)..))......((((.....)))).... (-21.84 = -22.88 + 1.04)
Location | 2,823,628 – 2,823,728 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 91.20 |
Mean single sequence MFE | -29.38 |
Consensus MFE | -22.34 |
Energy contribution | -22.90 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.53 |
Structure conservation index | 0.76 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.520964 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2823628 100 - 22407834 AUAACAAUGCUUAAUGGCGAAAAGACGGAUAUGAAGCUGGGAGGUCCUGUGACCAGGACAGACAGAUACGCCCAUCAGGCGUACUGCGUUCAAAACUAUC ....(...((((.(((.((......))..))).))))..)(((((((((....)))))).(.(((.((((((.....)))))))))).)))......... ( -26.50) >DroSec_CAF1 7315 100 - 1 AUAACCAUGUUCAAUGGGGAAAAGACGGAUAUGAAGCUGGGAGGUCCUGUGACCAGGACAGACAGAUACGCCGAUCAGGCGUACUGCGUUCAAAACUAUC ....((((.....))))(((...(.(((........(((....((((((....))))))...))).((((((.....)))))))))).)))......... ( -29.50) >DroSim_CAF1 9514 100 - 1 AUAACCAUGUUCAAUGGGGAAAAGACGGAUAUGAAGCUGGGAGGUCCUGUGACCAGGACAGACAGAUACGCCGAUCAGGCGUACUGCGUUCAAAACUAUC ....((((.....))))(((...(.(((........(((....((((((....))))))...))).((((((.....)))))))))).)))......... ( -29.50) >DroEre_CAF1 7196 100 - 1 AUAACCAUGCUUAAUGGUGAGAGGAAGGAUAUGCAGCUGGGAGGUCCUGUGACCAGGACCGAUAGAUACGCCCAGCAGGCCUACUGCGUUCAAAACUAUC ...(((((.....)))))((.((....((.((((.((((((.(((((((....)))))))..........))))))((.....))))))))....)).)) ( -33.40) >DroYak_CAF1 7246 100 - 1 AUAACCAUGUUAAAUGGUGAGAGAAAGGAUAUGCAGCUGGGUGGUCCUGUGACCAGGACAGAUAGAUACGCCCAUCAGGCCUUCUGCGUUCAAAACUAUC ...(((((.....))))).........((.((((((..((((.((((((....)))))).(((.(......).)))..)))).))))))))......... ( -28.00) >consensus AUAACCAUGUUCAAUGGGGAAAAGACGGAUAUGAAGCUGGGAGGUCCUGUGACCAGGACAGACAGAUACGCCCAUCAGGCGUACUGCGUUCAAAACUAUC ....((((.....)))).........((((.............((((((....)))))).(.(((.((((((.....))))))))))))))......... (-22.34 = -22.90 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:15 2006