Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 314,406 – 314,509 |
Length | 103 |
Max. P | 0.719933 |
Location | 314,406 – 314,509 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 88.74 |
Mean single sequence MFE | -22.12 |
Consensus MFE | -16.84 |
Energy contribution | -17.00 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.20 |
Mean z-score | -1.74 |
Structure conservation index | 0.76 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.719933 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 314406 103 + 22407834 CAAAGAAAUUUUUCUUUUGGCGCCAAGCAAUUUGGGGGGAAAUCAAUUCCGCAACGCUCCAAAAAUCAAAUCCAUUUUUUCGUGGAGAAUUAUUUCCUUUUAC ....(((((..(((((((((.((((((...)))).(.((((.....)))).)...)).))))))......(((((......))))))))..)))))....... ( -22.20) >DroSec_CAF1 18643 103 + 1 CAAAGAAAUUUUUCUUUUAGCGCCAAGCAAUGUGGAAGGAAAUCAAUUCCGCAACGCUCCAAAAUUCAAGUCCAUUUAUUCGUGGAGAAUUAUUUCCUUCUUC .((((((....))))))..((.....)).....((((((((((.(((((.((...)).............(((((......)))))))))))))))))))).. ( -22.40) >DroSim_CAF1 20448 103 + 1 CAAAGAAAUUUUUCUUUUAGCGCCAAGCAAUGUGGAAGGAAAUCAAUUCCGCAACGCUCCAAAAUUCAAGUCCAUUUAUUCGUGGAGAAUUAUUUCCUUAUUC ....(((((..(((...........(((..(((((((.........)))))))..)))............(((((......))))))))..)))))....... ( -20.30) >DroEre_CAF1 19934 103 + 1 CAUAGAAAUGUUUCCUUGGGCGCCAUGCAAUUUGGAAGGAAAGUAAUUCCGCAACGCUCCAAAAAUCAAAUCCAUUUAUUCAUGGAGAAUUAUUUCCUUUCAA ....((((((.(((.((((((((((.......)))..((((.....))))....))).))))........(((((......)))))))).))))))....... ( -22.90) >DroYak_CAF1 20390 102 + 1 CAAGGAAAUGUUUCUUUUGGCGCCAAGCAAUUUGGGAGGAAAUCAAUUCGGCAACGCUCCAAAAAUCAAAU-CAUUUAUUCACGGAGAAUUAUUUCCUUUUCU .(((((((((.((((((((((.....))......(((((((.....)))(....).))))...........-........)).)))))).))))))))).... ( -22.80) >consensus CAAAGAAAUUUUUCUUUUGGCGCCAAGCAAUUUGGAAGGAAAUCAAUUCCGCAACGCUCCAAAAAUCAAAUCCAUUUAUUCGUGGAGAAUUAUUUCCUUUUAC .((((((....))))))..((.....)).....((((((((((.(((((.((...)).............(((((......)))))))))))))))))))).. (-16.84 = -17.00 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:40 2006