Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,805,905 – 2,806,001 |
Length | 96 |
Max. P | 0.858129 |
Location | 2,805,905 – 2,806,001 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.48 |
Mean single sequence MFE | -28.90 |
Consensus MFE | -7.71 |
Energy contribution | -9.27 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.21 |
Mean z-score | -2.07 |
Structure conservation index | 0.27 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858129 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2805905 96 - 22407834 CGAUGCUACCAUAAAUCAAGUGCAG-GAUUAAAUAAGAUCAUCAUU---GGUAGCAACUAAAUUUGGCCAAUGACUCUC--------GACGUG------------GCCGAAAUUCGCCAA (((((((((((........(((...-((((......))))..))))---)))))))......((((((((.((.....)--------)...))------------))))))..))).... ( -25.70) >DroSec_CAF1 28780 97 - 1 CGAUGCUACCAUAAAUCAAGUGCAGGGAUUAACUAAGAUCAUCAUU---GAUAGCAACUAAAUUUGGCCAAUGACUCUC--------GACGUG------------GCCGAAAUUCGCCAA ((((((((.......((((.((....((((......))))..))))---)))))))......((((((((.((.....)--------)...))------------))))))..))).... ( -18.81) >DroSim_CAF1 30628 105 - 1 CGAUGCUACCAUAAAUCAAGUGCAG-GAUUAACUAAGAUCAUCAUU---GGUAGCAACUAAAUUUGGCCAAUGACUCUC--------GACGUGGCA---GCGUUGGCCGAAAUUCGCCAA (((((((((((........(((...-((((......))))..))))---)))))))......(((((((((((.((((.--------.....)).)---))))))))))))..))).... ( -31.50) >DroEre_CAF1 29415 99 - 1 CGAUGCUGCCAUAAAUCAAGUGCAG-GAUUAACUGGGCUCAU------------CCACUAAACUUGGCCAAUGCCUCUU--------GACGUGGCAGUAGUGUUGGCUGAAAUUCGGCAA ...(((((((((...(((((..(((-......)))(((....------------(((.......))).....))).)))--------)).)))))))))......((((.....)))).. ( -31.20) >DroYak_CAF1 28684 116 - 1 CAUUGCGGCCAUAAAUCAAGUGCAG-GAUUAACUGGGAUCAUCAUUUCGGAUACCCACUAAACUUGGCCAAUGUCUCUUUUGCCAAUAACGUGGCA---GUGUUGGCCAAAAUGCCGCAA ..(((((((.........((((..(-(..((.(((..((....))..))).))))))))....((((((((..(......(((((......)))))---)..))))))))...))))))) ( -37.30) >consensus CGAUGCUACCAUAAAUCAAGUGCAG_GAUUAACUAAGAUCAUCAUU___GAUAGCAACUAAAUUUGGCCAAUGACUCUC________GACGUGGCA___G_GUUGGCCGAAAUUCGCCAA ...(((.((..........)))))..((((......)))).......................((((((((((...........................)))))))))).......... ( -7.71 = -9.27 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:09 2006