Locus 978

Sequence ID 2L_DroMel_CAF1
Location 2,805,905 – 2,806,001
Length 96
Max. P 0.858129
window1570

overview

Window 0

Location 2,805,905 – 2,806,001
Length 96
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 77.48
Mean single sequence MFE -28.90
Consensus MFE -7.71
Energy contribution -9.27
Covariance contribution 1.56
Combinations/Pair 1.21
Mean z-score -2.07
Structure conservation index 0.27
SVM decision value 0.82
SVM RNA-class probability 0.858129
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2805905 96 - 22407834
CGAUGCUACCAUAAAUCAAGUGCAG-GAUUAAAUAAGAUCAUCAUU---GGUAGCAACUAAAUUUGGCCAAUGACUCUC--------GACGUG------------GCCGAAAUUCGCCAA
(((((((((((........(((...-((((......))))..))))---)))))))......((((((((.((.....)--------)...))------------))))))..))).... ( -25.70)
>DroSec_CAF1 28780 97 - 1
CGAUGCUACCAUAAAUCAAGUGCAGGGAUUAACUAAGAUCAUCAUU---GAUAGCAACUAAAUUUGGCCAAUGACUCUC--------GACGUG------------GCCGAAAUUCGCCAA
((((((((.......((((.((....((((......))))..))))---)))))))......((((((((.((.....)--------)...))------------))))))..))).... ( -18.81)
>DroSim_CAF1 30628 105 - 1
CGAUGCUACCAUAAAUCAAGUGCAG-GAUUAACUAAGAUCAUCAUU---GGUAGCAACUAAAUUUGGCCAAUGACUCUC--------GACGUGGCA---GCGUUGGCCGAAAUUCGCCAA
(((((((((((........(((...-((((......))))..))))---)))))))......(((((((((((.((((.--------.....)).)---))))))))))))..))).... ( -31.50)
>DroEre_CAF1 29415 99 - 1
CGAUGCUGCCAUAAAUCAAGUGCAG-GAUUAACUGGGCUCAU------------CCACUAAACUUGGCCAAUGCCUCUU--------GACGUGGCAGUAGUGUUGGCUGAAAUUCGGCAA
...(((((((((...(((((..(((-......)))(((....------------(((.......))).....))).)))--------)).)))))))))......((((.....)))).. ( -31.20)
>DroYak_CAF1 28684 116 - 1
CAUUGCGGCCAUAAAUCAAGUGCAG-GAUUAACUGGGAUCAUCAUUUCGGAUACCCACUAAACUUGGCCAAUGUCUCUUUUGCCAAUAACGUGGCA---GUGUUGGCCAAAAUGCCGCAA
..(((((((.........((((..(-(..((.(((..((....))..))).))))))))....((((((((..(......(((((......)))))---)..))))))))...))))))) ( -37.30)
>consensus
CGAUGCUACCAUAAAUCAAGUGCAG_GAUUAACUAAGAUCAUCAUU___GAUAGCAACUAAAUUUGGCCAAUGACUCUC________GACGUGGCA___G_GUUGGCCGAAAUUCGCCAA
...(((.((..........)))))..((((......)))).......................((((((((((...........................)))))))))).......... ( -7.71 =  -9.27 +   1.56) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:09 2006