Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,804,593 – 2,804,713 |
Length | 120 |
Max. P | 0.808238 |
Location | 2,804,593 – 2,804,713 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.61 |
Mean single sequence MFE | -32.44 |
Consensus MFE | -28.14 |
Energy contribution | -28.50 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.03 |
Mean z-score | -1.40 |
Structure conservation index | 0.87 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2804593 120 - 22407834 GCAGUCCAGUCCAGCGGAUUGCCUUUGACUUUCCCUGAUAGCCGACAUUGCCUAAUGGCGAUUGGUUCUCACAGCCAAAGCGAUACCAUCGCUUUCUUUUGAUGGCCCAAUGUCUAUUAA (((((((........)))))))....(((......(((.((((((..(((((....))))))))))).)))..(((((((((((...)))))))((....)))))).....)))...... ( -37.20) >DroSec_CAF1 27457 114 - 1 GCAGUCCAGUCCGGCGGAUUGCCU------UUCCCUGAUAGCCGACAUUGCCUAAUGGCGAUUGGUUCUCACAGCCAACGCGAUACCAUUGCUUUCUUUUGAUGGCCCAAAGUCUAUUAA (((((((........)))))))((------((...(((.((((((..(((((....))))))))))).)))..((((..(((((...)))))..((....))))))..))))........ ( -31.40) >DroSim_CAF1 29286 114 - 1 GCAGUCCAGUCCAGCGGAUUGCCU------UUCCCUGAUAGCCGACAUUGCCUAAUGGCGAUUGUUUCUCACAGCCAACGCGAUACCAUUGCUUUCUUUUGAUGGCCCAAAGUCUAUUAA (((((((........)))))))..------.....((((((.((((((((((....))))).)))).......((((..(((((...)))))..((....)))))).....).)))))). ( -30.00) >DroEre_CAF1 28079 114 - 1 GCAGUCCAGUCCAGCGGAUUGCCU------UUGCCAGAUAGCCGACAUUGCCUAAUGGCGAUUGGUUCUCACAGCCAACGCGAUACCAUCGCUUUCUUCUGAUGUCCCAAAGUCUAUAAA (((((((........)))))))((------(((...((.((((((..(((((....))))))))))).)).(((.....(((((...)))))......)))......)))))........ ( -32.40) >DroYak_CAF1 27322 114 - 1 GCAGUCGAGUCCAGCGGAUUGCCU------UCGCCUGAUAGCCGACAUUGCCUAAUGGCGAUUGGUUCUCACAGCCAACGCGAUACCAUCGCUUUCUUCCGAUGGCCCAAAGUCUAAUAA ((.((((.(((..(((((.....)------))))..)))...)))).(((((....)))))((((((.....)))))).))....((((((........))))))............... ( -31.20) >consensus GCAGUCCAGUCCAGCGGAUUGCCU______UUCCCUGAUAGCCGACAUUGCCUAAUGGCGAUUGGUUCUCACAGCCAACGCGAUACCAUCGCUUUCUUUUGAUGGCCCAAAGUCUAUUAA (((((((........)))))))..............((.((((((..(((((....))))))))))).))...((((..(((((...)))))..((....)))))).............. (-28.14 = -28.50 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:08 2006