Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,803,989 – 2,804,098 |
Length | 109 |
Max. P | 0.544787 |
Location | 2,803,989 – 2,804,098 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.09 |
Mean single sequence MFE | -27.74 |
Consensus MFE | -21.62 |
Energy contribution | -22.42 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.06 |
Mean z-score | -1.46 |
Structure conservation index | 0.78 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544787 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2803989 109 + 22407834 -AAAUUAGAC--GU-U-UCGAGUGAGAUUUUGCCUCGAUCCUGAGUAUACAAA------UCACGAAAGGUAUAUUGUGCGAUUCCAUCGCAUUAUAUUUGAGGUGAAUGCUUUAUUGUGA -.........--(.-.-(((((.(........))))))..).((((((.((..------((((....)..((((.(((((((...))))))).)))).)))..)).))))))........ ( -24.40) >DroSec_CAF1 26840 109 + 1 -AAAUUAGAC--GU-U-UAAAGUGAGAUUUUGCCUCGAUCCUGAGUAUACAAA------UUACGAAAGGUAUAUUGUGCGAUUCCAUCGCAUUAUAUUUGAGGUGAAUGCUUUAUUGUAA -.......((--(.-.-((((((.....((..((((((.(((..(((......------.)))...))).((((.(((((((...))))))).))))))))))..)).)))))).))).. ( -27.70) >DroSim_CAF1 28669 109 + 1 -AAAUUAGAC--GU-U-UGAAGUGAGAUUUUGCCUCGAUCCUGAGUAUACAAA------UUACGAAAGGUAUAUUGUGCGAUUCCAUCGCAUUAUAUUUGAGGUGAAUGCUUUAUUGUGA -.......((--(.-.-((((((.....((..((((((.(((..(((......------.)))...))).((((.(((((((...))))))).))))))))))..)).)))))).))).. ( -27.80) >DroEre_CAF1 27386 119 + 1 -AAAUUAUACUCGUAAGUUGGGAGAGAUUUUGCCUCGAUCCUGAGUAUACGAGUAGAAAUUGCGAAAGGUAUAUUGUGCGAUUCCAUCGCAUUAUAUUUGAGGUGAAUGCUUUGUUGUGA -......(((((((((.(..(((..((.......))..)))..).).))))))))....(..(((.(((((((..(((((((...))))))))))))))(((((....))))).)))..) ( -32.00) >DroYak_CAF1 26708 111 + 1 AAAAUUAGAC--GU-CGUUGGGAGCGAUCUUGCCUCGAUCCUGAGUAUACGAG------UUACGAAAGGUAUAUUGUGCGAUUCCAUCGCAGUAUAUUUGAGGUGAAUGCUUUAUUGUGA .........(--(.-((...((((((.((..(((((((.(((..(((......------.)))...)))(((((..((((((...))))))))))).))))))))).))))))..)))). ( -26.80) >consensus _AAAUUAGAC__GU_U_UUGAGUGAGAUUUUGCCUCGAUCCUGAGUAUACAAA______UUACGAAAGGUAUAUUGUGCGAUUCCAUCGCAUUAUAUUUGAGGUGAAUGCUUUAUUGUGA ....................((((((..((..((((((.(((..(((.............)))...))).((((.(((((((...))))))).))))))))))..))...)))))).... (-21.62 = -22.42 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:07 2006