Locus 975

Sequence ID 2L_DroMel_CAF1
Location 2,803,469 – 2,803,616
Length 147
Max. P 0.999354
window1566 window1567

overview

Window 6

Location 2,803,469 – 2,803,583
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.57
Mean single sequence MFE -27.42
Consensus MFE -26.84
Energy contribution -27.04
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.98
SVM decision value 3.53
SVM RNA-class probability 0.999354
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2803469 114 - 22407834
CUACUAUUCCUGGUUUAAUAGGUUAAGAAGAGGGCCAGCAGAACAAAGUCUUCUGAUUACAGAGGAUUUCUUGUUGACAACCGGAAAGUAGCCAGACA-AAACACAAAU-----AUACAC
(((((.((((.((((.....((((........)))).....((((((((((((((....)))))))))..)))))...))))))))))))).......-..........-----...... ( -27.40)
>DroSec_CAF1 26308 119 - 1
CUACUAUUCCUGGUUUAAUAGGUUAAGAAGAGGGCCAGCAGAACAAAGUCUUCUGAUUACAGAGGAUUUCUUGUUGACAACCGGAAAGUAGCCAGACA-AAACACAAAUACCAUAUACAC
(((((.((((.((((.....((((........)))).....((((((((((((((....)))))))))..)))))...))))))))))))).......-..................... ( -27.40)
>DroSim_CAF1 28142 114 - 1
CUACUAUUCCUGGUUUAAUAGGUUAAGAAGAGGGCCAGCAGAACAAAGUCUUCUGAUUACAGAGGAUUUCUUGUUGACAACCGGAAAGUAGCCAGACA-AAACACAAAU-----AUACAC
(((((.((((.((((.....((((........)))).....((((((((((((((....)))))))))..)))))...))))))))))))).......-..........-----...... ( -27.40)
>DroEre_CAF1 26882 115 - 1
CUACAAUUCCUGGUUAAAUAGGUUAAUAAGAGGGCCAGCAGAACAAAGUCUUCUGAUUACAGAGGAUUUCUUGUUGACAACCGGAAAGUAGCCAGACAUAAACACAAAU-----AUACAC
((((..((((.((((......(((((((((((..(.....)..)..(((((((((....))))))))))))))))))))))))))).))))..................-----...... ( -26.90)
>DroYak_CAF1 26152 115 - 1
CUACUAUUCCUGGUUAAAUAGGUUAAGAAGAGGGCCAGCAGAACAAAGUCUUCUGAUUACAGAGGAUUUCUUGUUGACAACCGGAAAGUAGCCAGACAUAAACACAAAU-----AUACAC
(((((.((((.((((.....((((........)))).....((((((((((((((....)))))))))..)))))...)))))))))))))..................-----...... ( -28.00)
>consensus
CUACUAUUCCUGGUUUAAUAGGUUAAGAAGAGGGCCAGCAGAACAAAGUCUUCUGAUUACAGAGGAUUUCUUGUUGACAACCGGAAAGUAGCCAGACA_AAACACAAAU_____AUACAC
(((((.((((.((((.....((((........)))).....((((((((((((((....)))))))))..)))))...)))))))))))))............................. (-26.84 = -27.04 +   0.20)

alignment

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secondary structure

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dotplot

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Window 7

Location 2,803,503 – 2,803,616
Length 113
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 96.46
Mean single sequence MFE -20.16
Consensus MFE -16.83
Energy contribution -17.23
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 0.83
SVM decision value 0.01
SVM RNA-class probability 0.539140
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2803503 113 + 22407834
UUGUCAACAAGAAAUCCUCUGUAAUCAGAAGACUUUGUUCUGCUGGCCCUCUUCUUAACCUAUUAAACCAGGAAUAGUAGAAAUAGAUUCAAAUCGUUUCAAUAACUCUAUUU
..........(((((..((((....)))).((.((((((((((((..(((....((((....))))...)))..)))))).)))))).)).....)))))............. ( -19.10)
>DroSec_CAF1 26347 113 + 1
UUGUCAACAAGAAAUCCUCUGUAAUCAGAAGACUUUGUUCUGCUGGCCCUCUUCUUAACCUAUUAAACCAGGAAUAGUAGAACUAGAUUCAAAUCGUUUCAAUAACUCUAUUU
..........(((((..((((....)))).((.((((((((((((..(((....((((....))))...)))..))))))))).))).)).....)))))............. ( -21.00)
>DroSim_CAF1 28176 113 + 1
UUGUCAACAAGAAAUCCUCUGUAAUCAGAAGACUUUGUUCUGCUGGCCCUCUUCUUAACCUAUUAAACCAGGAAUAGUAGAACUAGAUUCAAAUCGUUUCAAUAACUCUAUUU
..........(((((..((((....)))).((.((((((((((((..(((....((((....))))...)))..))))))))).))).)).....)))))............. ( -21.00)
>DroEre_CAF1 26917 113 + 1
UUGUCAACAAGAAAUCCUCUGUAAUCAGAAGACUUUGUUCUGCUGGCCCUCUUAUUAACCUAUUUAACCAGGAAUUGUAGAAGUAGAGUCAAACCGUUUCAAUAACUCUACUU
..........(((((..((((....)))).(((((((((((((....(((....((((.....))))..)))....)))))).))))))).....)))))............. ( -20.80)
>DroYak_CAF1 26187 113 + 1
UUGUCAACAAGAAAUCCUCUGUAAUCAGAAGACUUUGUUCUGCUGGCCCUCUUCUUAACCUAUUUAACCAGGAAUAGUAGCAAUAGAUUCAAACCGUUUCAAUAACUCUAUUU
..........(((((..((((....)))).((.((((((((((((..(((....((((.....))))..)))..)))))).)))))).)).....)))))............. ( -18.90)
>consensus
UUGUCAACAAGAAAUCCUCUGUAAUCAGAAGACUUUGUUCUGCUGGCCCUCUUCUUAACCUAUUAAACCAGGAAUAGUAGAAAUAGAUUCAAAUCGUUUCAAUAACUCUAUUU
..........(((((..((((....)))).((.((((((((((((..(((...................)))..)))))))).)))).)).....)))))............. (-16.83 = -17.23 +   0.40)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:06 2006