Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,802,523 – 2,802,623 |
Length | 100 |
Max. P | 0.707510 |
Location | 2,802,523 – 2,802,623 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 87.87 |
Mean single sequence MFE | -24.40 |
Consensus MFE | -22.74 |
Energy contribution | -22.55 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -1.42 |
Structure conservation index | 0.93 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707510 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2802523 100 + 22407834 UUGGCACUCGGACGCCUUGGCUAAUUGCUUUGGGUGCAGCCCAGAUGAUUGAGUGAAUUGAGUGAGACGAUUCGAUAAAAUAAGAUUCGAAUUUGGUUCA .....((((((.(((....)).......((((((.....)))))).).))))))((((..(((....(((.((..........)).))).)))..)))). ( -24.80) >DroSec_CAF1 25520 85 + 1 ---------------CUUGGCUAAUUGCUCUGGGUGCAGCCCAGAUGAUUGAGUGAAUUGAGUGAGACGAUUCGAUAAAAUAAGAUUCGAAUUUGGUUCA ---------------....((((((((.((((((.....))))))))))).)))((((..(((....(((.((..........)).))).)))..)))). ( -23.20) >DroSim_CAF1 26899 85 + 1 ---------------CUUGGCUAAUUGCUCUGGGUGCAGCCCAGAUGAUUGAGUGAAUUGAGUGAGACGAUUCGAUAAAAUAAGAUUCGAAUUUGGUUCA ---------------....((((((((.((((((.....))))))))))).)))((((..(((....(((.((..........)).))).)))..)))). ( -23.20) >DroEre_CAF1 25932 93 + 1 UUGGCACUUCG-------GGCUAAUUGCUCUGGGUGCAGCCCAGAUGAUUGAGUGAAUUGAGUGAGACGAUUCGAUAAAAUAAGAUUCGAAUUUGGUUCA (((((.(....-------))))))....((((((.....))))))........(((((..(((....(((.((..........)).))).)))..))))) ( -26.40) >consensus _______________CUUGGCUAAUUGCUCUGGGUGCAGCCCAGAUGAUUGAGUGAAUUGAGUGAGACGAUUCGAUAAAAUAAGAUUCGAAUUUGGUUCA ...................((((((((.((((((.....))))))))))).)))((((..(((....(((.((..........)).))).)))..)))). (-22.74 = -22.55 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:04 2006