Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,801,667 – 2,801,805 |
Length | 138 |
Max. P | 0.890642 |
Location | 2,801,667 – 2,801,777 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.83 |
Mean single sequence MFE | -29.05 |
Consensus MFE | -20.97 |
Energy contribution | -21.37 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.08 |
Mean z-score | -1.86 |
Structure conservation index | 0.72 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.710350 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2801667 110 + 22407834 CACCU-----AUAAUGGCCAU-UGGUUUUAUUUGCUUUGCAUAUGUGGUUUAUUCGGCACUUGCACCUUAUCAAGUGCUUAUACUC--ACAAUCCAGAUGUGCAAUA--GGCACAACUGA .....-----....(((((..-.(((.......)))((((((((.(((.......((((((((........)))))))).......--.....))).))))))))..--))).))..... ( -27.71) >DroSec_CAF1 24646 112 + 1 CACCU-----AUAAUGGCCAU-UGGUUUUAUUUGCUUUGCAUAUGUGGUUUAUUCGGCACUUGCACCUUAUCAAGUGCUUAUACUCGAGCAAUCCAGAUGUGCAAUA--GGCACAACUGA .....-----....(((((..-.(((.......)))((((((((.(((.((.(((((((((((........))))))).......)))).)).))).))))))))..--))).))..... ( -30.31) >DroSim_CAF1 26035 112 + 1 CACCU-----AUAAUGGCCAU-UGGUUUUAUUUGCUUUGCAUAUGUGGUUUAUUCGGCACUUGCACCUUAUCAAGUGCUUAUACUCGAGCAAUCCAGAUGUGCAAUA--GGCGCAAGUGA ..((.-----.....))....-.....((((((((.((((((((.(((.((.(((((((((((........))))))).......)))).)).))).))))))))..--...)))))))) ( -31.71) >DroEre_CAF1 25073 107 + 1 CACCU-----UUAAUGGGCUUAUGGUUUUAUUUGCUUUGCAUAUUCGCUUUAUUCGGCACUUGCACGUUAUCAAGUGCUUAUA--------GUCCAGAUGUGCAAUAGAGGCACAAGUUA ..(((-----(((...(((..(((....)))..)))((((((((..(..((((..((((((((........)))))))).)))--------)..)..))))))))))))))......... ( -28.70) >DroYak_CAF1 24288 110 + 1 CACCUACUAUAUAAUGGGCUUAUGGUUUUAUUUGCUUUGCAUUUUUGGUUCAUUUGGCGCCUGCACGUUAUCAAGUGCUUAUA--------GUCCAGAUGUGCAAUA--GGCGCAAGUGA .....((((((.........)))))).((((((((.((((((.(((((.......(((((.((........)).)))))....--------..))))).))))))..--...)))))))) ( -26.82) >consensus CACCU_____AUAAUGGCCAU_UGGUUUUAUUUGCUUUGCAUAUGUGGUUUAUUCGGCACUUGCACCUUAUCAAGUGCUUAUACUC___CAAUCCAGAUGUGCAAUA__GGCACAAGUGA .(((...................)))......((((((((((((.(((.......((((((((........))))))))..............))).))))))))....))))....... (-20.97 = -21.37 + 0.40)
Location | 2,801,701 – 2,801,805 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.20 |
Mean single sequence MFE | -25.92 |
Consensus MFE | -17.56 |
Energy contribution | -17.44 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.14 |
Mean z-score | -2.18 |
Structure conservation index | 0.68 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890642 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2801701 104 + 22407834 AUAUGUGGUUUAUUCGGCACUUGCACCUUAUCAAGUGCUUAUACUC--ACAAUCCAGAUGUGCAAUA--GGCACAACUGAAGUUCUC-ACUUCUUCUAAUCUACAUGAA----------- .(((((((.(((...((((((((........)))))))).......--......(((.(((((....--.))))).)))........-........))).)))))))..----------- ( -26.70) >DroSec_CAF1 24680 117 + 1 AUAUGUGGUUUAUUCGGCACUUGCACCUUAUCAAGUGCUUAUACUCGAGCAAUCCAGAUGUGCAAUA--GGCACAACUGAAGUUCUC-ACUUCUUCUAAUCUUCAUGUAGAUUAUAAAGA ....((((.......((((((((........)))))))).......((((....(((.(((((....--.))))).)))..))))))-)).((((.((((((......))))))..)))) ( -29.30) >DroSim_CAF1 26069 106 + 1 AUAUGUGGUUUAUUCGGCACUUGCACCUUAUCAAGUGCUUAUACUCGAGCAAUCCAGAUGUGCAAUA--GGCGCAAGUGAAGUUCUC-ACUUCUUCUAAUCUACAUGAA----------- .(((((((.(((......((((((.(((.......(((.(((.((.((....)).))))).)))..)--)).))))))(((((....-)))))...))).)))))))..----------- ( -28.20) >DroEre_CAF1 25108 101 + 1 AUAUUCGCUUUAUUCGGCACUUGCACGUUAUCAAGUGCUUAUA--------GUCCAGAUGUGCAAUAGAGGCACAAGUUAAGUUCUUAACUUUUUCUAAUCUCCAUGGA----------- .........((((..((((((((........)))))))).)))--------)((((..(((((.......)))))((((((....))))))..............))))----------- ( -22.20) >DroYak_CAF1 24328 99 + 1 AUUUUUGGUUCAUUUGGCGCCUGCACGUUAUCAAGUGCUUAUA--------GUCCAGAUGUGCAAUA--GGCGCAAGUGAAGUUCUUAACUUUUUCUAAUCUCCAUGAA----------- .....(((((((((((.((((((((((((..............--------.....)))))))...)--))))))))))))((.....))............)))....----------- ( -23.21) >consensus AUAUGUGGUUUAUUCGGCACUUGCACCUUAUCAAGUGCUUAUACUC___CAAUCCAGAUGUGCAAUA__GGCACAAGUGAAGUUCUC_ACUUCUUCUAAUCUACAUGAA___________ ...............((((((((........))))))))................((((((((.......)))))...(((((.....))))).)))....................... (-17.56 = -17.44 + -0.12)
Location | 2,801,701 – 2,801,805 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.20 |
Mean single sequence MFE | -26.50 |
Consensus MFE | -15.72 |
Energy contribution | -16.56 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.05 |
Mean z-score | -1.97 |
Structure conservation index | 0.59 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633622 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2801701 104 - 22407834 -----------UUCAUGUAGAUUAGAAGAAGU-GAGAACUUCAGUUGUGCC--UAUUGCACAUCUGGAUUGU--GAGUAUAAGCACUUGAUAAGGUGCAAGUGCCGAAUAAACCACAUAU -----------...((((.........(((((-....)))))((.(((((.--....))))).))((.((((--..((((..((((((....))))))..))))...)))).)))))).. ( -27.70) >DroSec_CAF1 24680 117 - 1 UCUUUAUAAUCUACAUGAAGAUUAGAAGAAGU-GAGAACUUCAGUUGUGCC--UAUUGCACAUCUGGAUUGCUCGAGUAUAAGCACUUGAUAAGGUGCAAGUGCCGAAUAAACCACAUAU (((((.((((((......))))))))))).((-(.....(((((.(((((.--....))))).)))))(((.(((.((((..((((((....))))))..))))))).)))..))).... ( -35.10) >DroSim_CAF1 26069 106 - 1 -----------UUCAUGUAGAUUAGAAGAAGU-GAGAACUUCACUUGCGCC--UAUUGCACAUCUGGAUUGCUCGAGUAUAAGCACUUGAUAAGGUGCAAGUGCCGAAUAAACCACAUAU -----------...((((.(.(((...(((((-....)))))(((((((((--(...(((.........)))((((((......))))))..))))))))))......))).).)))).. ( -28.60) >DroEre_CAF1 25108 101 - 1 -----------UCCAUGGAGAUUAGAAAAAGUUAAGAACUUAACUUGUGCCUCUAUUGCACAUCUGGAC--------UAUAAGCACUUGAUAACGUGCAAGUGCCGAAUAAAGCGAAUAU -----------((((.((..........(((((((....)))))))((((.......)))).)))))).--------.....(((((((........)))))))................ ( -21.80) >DroYak_CAF1 24328 99 - 1 -----------UUCAUGGAGAUUAGAAAAAGUUAAGAACUUCACUUGCGCC--UAUUGCACAUCUGGAC--------UAUAAGCACUUGAUAACGUGCAGGCGCCAAAUGAACCAAAAAU -----------(((((((((.((((......))))...))))....(((((--(...(((((((.(..(--------.....)..)..)))...))))))))))...)))))........ ( -19.30) >consensus ___________UUCAUGGAGAUUAGAAGAAGU_GAGAACUUCACUUGUGCC__UAUUGCACAUCUGGAUUG___GAGUAUAAGCACUUGAUAAGGUGCAAGUGCCGAAUAAACCACAUAU .....................(((((.(((((.....)))))...(((((.......))))))))))...............(((((((........)))))))................ (-15.72 = -16.56 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:03 2006