Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,801,397 – 2,801,517 |
Length | 120 |
Max. P | 0.985592 |
Location | 2,801,397 – 2,801,517 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.76 |
Mean single sequence MFE | -39.30 |
Consensus MFE | -30.18 |
Energy contribution | -31.66 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.07 |
Mean z-score | -3.03 |
Structure conservation index | 0.77 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985592 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2801397 120 + 22407834 CGUGGGGCAAUUGCAUUAUUGGGGUUGCUGUGUCAUCGAGACUAAUCGAUUUGAAUUGGGGCAAUUGGCAUGAUUGCUUUGGUUUGGUUUGGGGCAACUUUGAUGAGGUAAUGCGAAGUU ......(((.((((.((((..((((((((..(((.....)))...((((.(..(((..((((((((.....))))))))..)))..).))))))))))))..)))).)))))))...... ( -42.80) >DroSec_CAF1 24379 119 + 1 CGUGGGGCAAUUGCAUUAUUGGGGUUGCUGCGUCAUCGAGACCAAUCGAUUUGAAUUGGGGCAAUUGGCAUGAUUGCUGUGGUUUGGUUUGGGGCAACU-UGAUGAGGUAAUGCGAAUUU (((..(((((((.((....)).)))))))((.((((((((.....((((.(..(((((.(((((((.....))))))).)))))..).)))).....))-)))))).))...)))..... ( -40.30) >DroSim_CAF1 25767 119 + 1 CGUGGGGCAAUUGCAUUAUUGGGGUUGCUGUGUCAUCGAGACCAAUCGAUUUGAAUUGGGGCAAUUGGCAUGAUUGCUGUGGUUUGGUUUGGGGCAACU-UGAUGAGGUAAUGCGAAGUU (((..(((((((.((....)).))))))).(.((((((((.....((((.(..(((((.(((((((.....))))))).)))))..).)))).....))-)))))).)....)))..... ( -37.10) >DroEre_CAF1 24801 114 + 1 CGUGGGGCAAUUGCAUUAUUGGGGUUGCUGUGUCAUCGAGACCAAUCGAUCUGAAUUGGGGCAAUUGGGAUGAUUGG-----UUCGGCUUGUGGCAACU-UGAUGAGGUAAUGCAAAGUU ..........((((((((((.(((((((..((...(((((.((((((.((((.(((((...))))).))))))))))-----)))))..))..))))))-).....)))))))))).... ( -40.00) >DroYak_CAF1 24020 114 + 1 CGUGGGGCAAUUGCAUUAUUGGGGUUGCUGUGUCAUCGACAGCAAUCGAUUUGAAUUGGGGCAAUUGUGAUGAUUGC-----UUCGCUUUGGGGCAACU-UGAUGAGGUAAUGCAAAGUU ..........((((((((((..(((((((((.......)))))))))..........(((((((((.....))))))-----)))...(..((....))-..)...)))))))))).... ( -36.30) >consensus CGUGGGGCAAUUGCAUUAUUGGGGUUGCUGUGUCAUCGAGACCAAUCGAUUUGAAUUGGGGCAAUUGGCAUGAUUGCU_UGGUUUGGUUUGGGGCAACU_UGAUGAGGUAAUGCGAAGUU ......(((.((((.((((((.(((((((.(...(((((......)))))((((((((.(((((((.....))))))).))))))))...).))))))).)))))).)))))))...... (-30.18 = -31.66 + 1.48)
Location | 2,801,397 – 2,801,517 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.76 |
Mean single sequence MFE | -19.85 |
Consensus MFE | -14.90 |
Energy contribution | -15.10 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.17 |
Structure conservation index | 0.75 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838201 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2801397 120 - 22407834 AACUUCGCAUUACCUCAUCAAAGUUGCCCCAAACCAAACCAAAGCAAUCAUGCCAAUUGCCCCAAUUCAAAUCGAUUAGUCUCGAUGACACAGCAACCCCAAUAAUGCAAUUGCCCCACG ......((((((..........(((((................(((((.......)))))..........(((((......)))))......))))).....))))))............ ( -16.16) >DroSec_CAF1 24379 119 - 1 AAAUUCGCAUUACCUCAUCA-AGUUGCCCCAAACCAAACCACAGCAAUCAUGCCAAUUGCCCCAAUUCAAAUCGAUUGGUCUCGAUGACGCAGCAACCCCAAUAAUGCAAUUGCCCCACG ......((((((........-.(((((................(((((.......))))).((((((......))))))..........)))))........))))))............ ( -18.73) >DroSim_CAF1 25767 119 - 1 AACUUCGCAUUACCUCAUCA-AGUUGCCCCAAACCAAACCACAGCAAUCAUGCCAAUUGCCCCAAUUCAAAUCGAUUGGUCUCGAUGACACAGCAACCCCAAUAAUGCAAUUGCCCCACG ......((((((........-.(((((................(((((.......))))).((((((......)))))).............))))).....))))))............ ( -17.34) >DroEre_CAF1 24801 114 - 1 AACUUUGCAUUACCUCAUCA-AGUUGCCACAAGCCGAA-----CCAAUCAUCCCAAUUGCCCCAAUUCAGAUCGAUUGGUCUCGAUGACACAGCAACCCCAAUAAUGCAAUUGCCCCACG ....((((((((........-.(((((.......((((-----(((((((((..(((((...)))))..))).))))))).)))........))))).....)))))))).......... ( -24.80) >DroYak_CAF1 24020 114 - 1 AACUUUGCAUUACCUCAUCA-AGUUGCCCCAAAGCGAA-----GCAAUCAUCACAAUUGCCCCAAUUCAAAUCGAUUGCUGUCGAUGACACAGCAACCCCAAUAAUGCAAUUGCCCCACG ....((((((((........-.(((((.......((((-----((((((.....(((((...)))))......))))))).)))........))))).....)))))))).......... ( -22.20) >consensus AACUUCGCAUUACCUCAUCA_AGUUGCCCCAAACCAAACCA_AGCAAUCAUGCCAAUUGCCCCAAUUCAAAUCGAUUGGUCUCGAUGACACAGCAACCCCAAUAAUGCAAUUGCCCCACG ......((((((..........(((((................(((((.......)))))..........(((((......)))))......))))).....))))))............ (-14.90 = -15.10 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:00 2006