Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,798,670 – 2,798,767 |
Length | 97 |
Max. P | 0.992048 |
Location | 2,798,670 – 2,798,767 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 91.01 |
Mean single sequence MFE | -40.16 |
Consensus MFE | -31.20 |
Energy contribution | -32.32 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.06 |
Mean z-score | -2.26 |
Structure conservation index | 0.78 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944407 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2798670 97 + 22407834 UCGGCAGCAGUGGCGACUAUUUGGCAGGAAGGAUAUGGUGAUGCGGGUCCUGGCGCUU-GUCGAUGUAUGUG--UG--CUGCUG---CUGCUGCCUGAUUUAUGU .(((((((((..((((((((((((((((.(((((.((......)).)))))....)))-))))).))).)).--))--)..)))---))))))............ ( -40.50) >DroSec_CAF1 21738 102 + 1 GCGGCAGCAGUGGCGACUAUUUGGCAGGAAGGAUAUGGUGAUGCGGAUCCUGGCGCUU-GUCGAUGUAUGUG--UGAGCUGCUGCUGCUGCUGCCUGAUUUAUGU ((((((((((..((.(((((((((((((.(((((.((......)).)))))....)))-))))).))).)).--...))..)))))))))).............. ( -42.50) >DroSim_CAF1 23122 99 + 1 GCGGCAGCAGUGGCGACUAUUUGGCAGGAAGGAUAUGGUGAUGCGGAUCCUGGCGCUU-GUCGAUGUAUGUG--UGAGCUGCUG---CUGCUGCCUGAUUUAUGU ((((((((((..((.(((((((((((((.(((((.((......)).)))))....)))-))))).))).)).--...))..)))---)))))))........... ( -42.10) >DroEre_CAF1 22014 104 + 1 GCGGCAGCAGUGGCGACUGUUUGGCAGGAAGGAUAUGGUGAUGCGGGUCCUGGCGCUU-GUCGAUGUGUGUGUGUGAGCUGCUCCUGCUGCUGCCUGCUAUUUGU ((((((((((..(((((...((((((((.(((((.((......)).)))))....)))-)))))...))((......)))))..))))))))))........... ( -40.30) >DroYak_CAF1 21186 105 + 1 GCGGCAGCAGUGGCGACUGUUUGGCAGGAAGGAUAUGGUGAUGCGGGUCCUGGCGCUUCGUCGAUGUGUGUGUGUGAGCUCCUCCUGCUGCUGCCUGUUAUUUGU ..((((((((..(((((.(..((.(((((.(.((......)).)...))))).))..).))))............(((...))))..)))))))).......... ( -35.40) >consensus GCGGCAGCAGUGGCGACUAUUUGGCAGGAAGGAUAUGGUGAUGCGGGUCCUGGCGCUU_GUCGAUGUAUGUG__UGAGCUGCUGCUGCUGCUGCCUGAUUUAUGU ..(((((((((((((((.(..((.(((((.(.((......)).)...))))).))..).))))..(((.((......)))))..))))))))))).......... (-31.20 = -32.32 + 1.12)
Location | 2,798,670 – 2,798,767 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 91.01 |
Mean single sequence MFE | -26.54 |
Consensus MFE | -21.95 |
Energy contribution | -21.95 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.35 |
Structure conservation index | 0.83 |
SVM decision value | 2.30 |
SVM RNA-class probability | 0.992048 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2798670 97 - 22407834 ACAUAAAUCAGGCAGCAG---CAGCAG--CA--CACAUACAUCGAC-AAGCGCCAGGACCCGCAUCACCAUAUCCUUCCUGCCAAAUAGUCGCCACUGCUGCCGA ..........((((((((---..((.(--(.--.............-..))(.(((((..................))))).)........))..)))))))).. ( -24.56) >DroSec_CAF1 21738 102 - 1 ACAUAAAUCAGGCAGCAGCAGCAGCAGCUCA--CACAUACAUCGAC-AAGCGCCAGGAUCCGCAUCACCAUAUCCUUCCUGCCAAAUAGUCGCCACUGCUGCCGC ..........((((((((..((.((.(((..--.............-.)))(.(((((..................))))).).....)).))..)))))))).. ( -27.56) >DroSim_CAF1 23122 99 - 1 ACAUAAAUCAGGCAGCAG---CAGCAGCUCA--CACAUACAUCGAC-AAGCGCCAGGAUCCGCAUCACCAUAUCCUUCCUGCCAAAUAGUCGCCACUGCUGCCGC ..........((((((((---..((.(((..--.............-.)))(.(((((..................))))).)........))..)))))))).. ( -26.26) >DroEre_CAF1 22014 104 - 1 ACAAAUAGCAGGCAGCAGCAGGAGCAGCUCACACACACACAUCGAC-AAGCGCCAGGACCCGCAUCACCAUAUCCUUCCUGCCAAACAGUCGCCACUGCUGCCGC .......((.((((((.((((((((.(((.................-.))))).((((..............)))))))))).....(((....))))))))))) ( -25.61) >DroYak_CAF1 21186 105 - 1 ACAAAUAACAGGCAGCAGCAGGAGGAGCUCACACACACACAUCGACGAAGCGCCAGGACCCGCAUCACCAUAUCCUUCCUGCCAAACAGUCGCCACUGCUGCCGC ..........((((((.((((((((((......)............((.(((........))).))......))).)))))).....(((....))))))))).. ( -28.70) >consensus ACAUAAAUCAGGCAGCAGCAGCAGCAGCUCA__CACAUACAUCGAC_AAGCGCCAGGACCCGCAUCACCAUAUCCUUCCUGCCAAAUAGUCGCCACUGCUGCCGC ..........((((((((........(......)........((((.......(((((..................))))).......))))...)))))))).. (-21.95 = -21.95 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:58 2006