| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 312,391 – 312,498 |
| Length | 107 |
| Max. P | 0.815770 |
| Location | 312,391 – 312,498 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 78.34 |
| Mean single sequence MFE | -30.08 |
| Consensus MFE | -15.07 |
| Energy contribution | -18.60 |
| Covariance contribution | 3.53 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815770 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 312391 107 + 22407834 ACCAACAAUGUUGGAGCGCGACUUUCUCGCUGUGUGGCACCCAUUUGGUUGCUCCUGGUGAUAGAC-------CAUUGCACAGCGAUCUAUCAUUAUAAUGAAGCGUCAAAUCU .(((((...))))).((((.......(((((((((((((.((....)).))))..((((.....))-------))..)))))))))....((((....)))).))))....... ( -34.70) >DroSec_CAF1 16633 106 + 1 ACCAACAAUGUUGGCGCGCGACUUUCUCGCUGUGUGGCACCCAUUUGGUUGCUC-UGGUGAUAGAC-------CAAUGCACAGCGAUCUAUCAUUAUAAUGAAGCGUCAAAUCU ..........(((((((.........(((((((((((((.((....)).)))).-((((.....))-------))..)))))))))....((((....)))).))))))).... ( -35.60) >DroSim_CAF1 18453 107 + 1 ACCAACAAUGUUGGCGCGCGACUUUCUCGCUGUGUGGCACCCAUUUGGUUGCUCUUGGUGAUAGAC-------CAAUGCACAGCGAUCUAUCAUUAUAAUGAAGCGUCAAAUCU ..........(((((((.........(((((((((((((.((....)).)))).(((((.....))-------))).)))))))))....((((....)))).))))))).... ( -36.30) >DroEre_CAF1 17876 93 + 1 AGU--------UG------AGUUUUCUCGCUGUGUGGUGCCCAUUUGGUUGCUCUUGGUGAUAGAC-------CAAUGCACAUCGAUCUAUCAUUGUAAUGAAGCGUCAAAUCU ...--------.(------((....)))(((.((..(((.....((((((((..(((((.....))-------))).))).))))).....)))..))....)))......... ( -20.90) >DroYak_CAF1 18367 114 + 1 ACUAACAAUAUUGGCGCGCGACUUUCUCGCUGUGUGGCACCCAUUUGGUUGCUCUUGGUGAUAGACGAUAGAGCAAUGCACAGCGAUCUAUCAUUAUAAUGAAGCGUCAAAUCU ..........(((((((.........(((((((((((...)).....(((((((((.((.....)).).)))))))))))))))))....((((....)))).))))))).... ( -36.50) >DroAna_CAF1 26633 89 + 1 AUUAACAUAA-UUUCGCUCUAUUUUCUGUCA-----------------GUGCUUUGGUUUAGACAC-------CAACGCACAACGAUCUAUCAUUAUAAUGAAGCGUCAAAUCU ..........-...((((.............-----------------((((.(((((......))-------))).)))).........((((....))))))))........ ( -16.50) >consensus ACCAACAAUGUUGGCGCGCGACUUUCUCGCUGUGUGGCACCCAUUUGGUUGCUCUUGGUGAUAGAC_______CAAUGCACAGCGAUCUAUCAUUAUAAUGAAGCGUCAAAUCU ..........(((((((.........(((((((((((((.((....)).))))........................)))))))))....((((....)))).))))))).... (-15.07 = -18.60 + 3.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:25:39 2006